KEGG   Sorangium cellulosum So ce56: sce2612
Entry
sce2612           CDS       T00634                                 
Name
(GenBank) hypothetical protein
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
scl  Sorangium cellulosum So ce56
Pathway
scl03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:scl00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    sce2612
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:scl03019]
    sce2612
Messenger RNA biogenesis [BR:scl03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     sce2612
SSDB
Motif
Pfam: Lactamase_B_2 RNase_J_C Lactamase_B RMMBL Lactamase_B_3 Lactamase_B_6
Other DBs
NCBI-ProteinID: CAN92771
UniProt: A9G732
Position
complement(3529460..3531058)
AA seq 532 aa
MNAMLIEEEGRRVLVDCGVMFPNDQVLGVEVAIPDLSYVREAGGVDAVLLTHGHEDHIGG
LPSLLREFPVPVFGTRFTLRLVRERLAEHGIDVPLREVEPQQHFAAGPFRAEPLRVTHSI
PDAVGYAIETGEGILIHTGDYKIDLTPVAGERLDLGRFAEYGRAGVAALLSDSTNSERDG
WSVSETAVAEGFTRRFREAKGRILVALFASNVHRVQSVLDLAAQLGRKVVLAGRSLATNT
RIAEEIGILRVPPGVLVDDATAASLPPERLVVLASGAQGEPNSALARMAMGDHHRLRVDP
GDTVIFSSRAIPGNEIAVSQLANRLAKRGAVVLDRGLDPIHASGHAQAEEQKVLLDAVRP
EHFVPIHGEYRMLLAHARTALRMGVPASGVFVVEDGDSLILEDGRMRLGETVKSGRVWLD
ARGGLDVSELVLREREQISDQGLVMVLVVADRKTGEILRGPDLLGRGVAHFEEGGPLYAA
ALDSARDALAALSPAARTLAPALEDALSRGVRRVFRREASRRPAVLPLAVLL
NT seq 1599 nt   +upstreamnt  +downstreamnt
atgaacgcgatgctgatcgaggaggaaggccgccgcgtgctcgtcgactgcggcgtcatg
ttccccaacgaccaggtgctgggcgtcgaggtcgcgatccccgacctcagctacgtccgc
gaggcgggcggggtcgacgcggtgctgctcacgcacggccacgaggatcacatcggcggg
ctgccgtcgctgctgcgcgagttccccgtccccgtgttcgggacgcgcttcacgctccgg
ctggtgcgcgagcgcctcgccgagcacggcatcgacgtgccgctccgcgaggtcgagccg
caacagcacttcgcggccggaccgttccgcgccgagcccctccgcgtgacccactccatc
cccgacgcggtcggttacgccatcgagacgggcgaggggatcctcatccacacgggcgac
tacaagatcgatctcacccccgtggccggcgagcggctcgatctcggccgcttcgccgag
tacggccgggccggcgtggcggcgctcctctcggactcgaccaactcggagcgcgacggc
tggtcggtcagcgagaccgcggtggccgaaggcttcacccggcggtttcgcgaggcgaag
gggcgcatcctcgtcgcgctgttcgcctccaacgtccaccgggtccagagcgtcctcgac
ctcgccgcccagctcggccgcaaggtggtgctcgccgggcgcagcctcgcgaccaacacg
cggatcgccgaggagatcggcatcctgcgcgtcccgcccggcgtgctcgtcgacgacgcc
acggcggcctcgctcccgcccgagcgcctcgtcgtgctcgcttcgggcgcgcagggcgag
ccgaacagcgccctcgcgcgcatggccatgggcgaccaccaccggctgcgggtcgatccg
ggggacacggtgatcttctcgtcccgcgcgatccccggcaacgagatcgccgtcagccag
ctcgccaaccgcctggcgaagcgcggcgccgtggtgctcgatcgcggcctcgatcccatc
cacgcgagcggccacgcgcaggccgaggagcagaaggtcctcctcgacgccgtccggccg
gagcacttcgtccccatccacggcgagtaccggatgctgctcgcccacgcgcgcacggcg
ctccggatgggcgtgccggcgtcgggggtcttcgtcgtcgaggacggcgactcgctgatc
ctcgaggacggccggatgcgcctcggcgagacggtgaagagcgggcgggtgtggctcgac
gcgcgcggcgggctcgacgtctccgagctggtgctccgcgagcgcgagcagatctcggat
caggggctcgtgatggtcctggtggtggccgaccgcaagacgggcgagatcttgcgcggc
cccgatctcctcgggcgcggcgtggcgcacttcgaggagggcggcccgctgtacgccgcc
gcgctcgacagcgcgcgcgacgcgctcgctgcgctgtcccccgcggcgcgcacgctggcg
ccggcgctggaggacgcgctcagccgcggcgtgcggcgggtgttccggcgcgaggcctcg
cggcgccccgccgtgctcccgctggccgtgttgctgtga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (9)   
   KEGG ORTHOLOGY (1)   
   RefGene (6)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (20)   

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