KEGG   Sorangium cellulosum So ce56: sce2885
Entry
sce2885           CDS       T00634                                 
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase RecQ
  KO
K03654  ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
Organism
scl  Sorangium cellulosum So ce56
Pathway
scl03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:scl00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    sce2885 (recQ)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:scl03019]
    sce2885 (recQ)
   03400 DNA repair and recombination proteins [BR:scl03400]
    sce2885 (recQ)
Enzymes [BR:scl01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     sce2885 (recQ)
Messenger RNA biogenesis [BR:scl03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     sce2885 (recQ)
DNA repair and recombination proteins [BR:scl03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      sce2885 (recQ)
SSDB
Motif
Pfam: DEAD Helicase_C HRDC RQC RecQ_Zn_bind ResIII
Other DBs
NCBI-ProteinID: CAN93044
UniProt: A9GEQ8
Position
complement(3933198..3935372)
AA seq 724 aa
MVLAERPSPIVTERLAPSPLRPPESPPPSLDAVLAERFGIAAFRPWQREAIEALLGGAGR
VLVVAPTGGGKSLCYQLPAVALPGTALVLSPLISLMEDQVRALEARGIPATFIASSLARE
ENGRRLAALRRGEYKLVYAAPERLALDGFLEALAASRLSLVAVDEAHCIVQWGHDFRPDY
LRIGAALARLRPPRVLACTATATPDARDEIIRRLGWPLPAPDGAGDGGGDAVSGRGPEEP
PPKVILRGFARPNLHLQVSAVDGPREAGRRTARALLEALGDPGRPRGAGIVYAATRKGAE
RLAEALRDAGWNAEAYHAGLAPESRARISAGFADRSLSVVVATNAFGMGIDRPDVRLVVH
AQPPSSIEAYYQEVGRAGRDGGPARGLLLFAPADIALRRRLCQLGEGGVEASADDAARAW
GLFRELLRYVDAATCRHDFILRYFGDEAESLGGCGHCDVCLEVDALEASDPAALARDNDL
VRRALAGVARVKGGAGLQAVASMLIGESNERVRRMGLDRLSTFGVLEKKSHDEAMSILRA
LLANAWIDLTTGEFPVPLITPAGWRVMRGDVPARVRLPVPAARRRPRRAAPGPSPARSPA
AAPSPRARAQPAPQAFTSAATSDDAARPAPGAPLPASRAQAEPGVELEERDVPLFEALRA
HRAALAKEKSLPAYVIAHDRTLREIARIRPASLDDLALARGMGQAKISIYGEGILRVVRE
FSGP
NT seq 2175 nt   +upstreamnt  +downstreamnt
atggtcctcgctgaacgcccctcgccgatcgtgaccgagcgcctcgccccctccccgctg
cgcccgccggagagcccgccaccgtcgctcgacgccgtgctcgcggagcggttcggcatc
gccgcgttccggccgtggcagcgggaggcgatcgaggccctgctcgggggcgcggggcgc
gtcctcgtggtcgccccgaccggcggcggcaagtcgctctgctaccagctcccggccgtc
gccctgcccggcacggcgctcgtcctgagcccgctcatctccctgatggaagatcaggtc
cgcgccctcgaggcgcgcggcatcccggcgacgttcatcgcgtccagcctcgcgcgcgag
gagaacggccgccgcctcgccgccctccgccgcggcgagtacaagctcgtctacgccgcg
cccgagcgcctcgccctcgacgggttcctcgaggcgctcgccgcgagccgcctctcgctc
gtcgccgtcgacgaggcgcactgcatcgtccagtgggggcacgacttccggcccgactac
ctgcgcatcggcgccgcgctcgcgcggctccggccgccccgggtcctcgcctgcaccgcg
acggcgacccccgacgcgcgcgacgagatcatccgccggctcggctggccgctgcccgcg
cccgacggcgcgggcgacggcggcggcgatgcggtgagcgggcgcggccccgaggagccg
ccgcccaaggtgatcctgcgcggcttcgcccggcccaacctccacctgcaggtctccgcc
gtcgacggcccgcgcgaggccgggcgccgcacggcgcgcgcgctgctggaggccctcggc
gatcccgggcggccccgcggggcgggcatcgtctacgcggccacccgcaagggagccgag
cgcctcgccgaggcgctccgcgacgccggctggaacgcggaagcgtaccacgccgggctc
gcccccgagtcccgcgcgcgcatctcggcgggcttcgccgatcggagcctctccgtggtc
gtggccacgaacgccttcggcatggggatcgaccgccccgacgtccgcctcgtcgtgcac
gcccagccgccgtcgtcgatcgaagcgtattaccaggaggtcggccgcgccgggcgggac
ggcggcccggcccgcggcctcctcctgttcgcgcccgcggacatcgcgctgcgccgccgg
ctctgccagctcggcgaggggggcgtcgaggcgagcgccgacgacgcggcgcgcgcctgg
gggctgttccgcgagctgctccgctacgtcgacgccgcgacgtgccggcacgacttcatc
ctccgctacttcggcgacgaggccgagtcgctcggcggctgcggccactgcgacgtctgc
ctggaggtcgacgccctcgaggcgagcgacccggccgcgctcgcccgcgacaacgacctc
gtgcgccgcgcgctcgccggcgtcgcgcgggtgaagggcggcgccgggctgcaggcggtc
gcgtcgatgctcatcggcgagtcgaacgagcgcgtccgccgcatggggctcgaccggctc
tcgacgttcggcgtcctcgagaagaagagccacgacgaagcgatgtcgatcctccgcgcg
ctgctcgccaacgcgtggatcgatctcacgaccggcgagttccccgtccccctcatcacg
ccggcgggctggcgcgtgatgcgcggagacgtgcccgcgcgggtgcggctcccggtcccc
gccgcccgccggcggccgcgccgcgcggcgccgggcccgtccccggcgcgctcgccggcg
gccgcgccctccccgcgggcgcgcgcgcagccggccccgcaggcgttcacgtccgcagcg
accagcgacgacgcggcgcgccccgcgccgggcgcccccctccccgcctcgcgcgcgcaa
gcggagcccggcgtcgagctcgaggagcgcgacgtgccgctgttcgaggcgctccgggcc
cacagggccgcgctcgcgaaggagaagtcgctgcccgcctacgtcatcgcgcacgaccgg
acgctccgggagatcgcgcggatccggcccgcgtcgctcgacgacctcgcgctcgcgcgc
ggcatggggcaggcgaagatctcgatctacggggagggcatcctccgcgtcgtccgggag
ttctcgggcccctga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (49)   
   KEGG ORTHOLOGY (1)   
   RefGene (46)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (63)   

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