KEGG T00634: sce6857

Sorangium cellulosum: sce6857

Entry

sce6857 CDS T00634

Gene name

ligB

Definition

ATP-dependent DNA ligase (EC:6.5.1.1)

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

scl Sorangium cellulosum

Pathway

scl03410	Base excision repair
scl03420	Nucleotide excision repair
scl03430	Mismatch repair
scl03450	Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:scl03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:scl03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:scl03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:scl03450]

SSDB

Motif

Pfam:

DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C

Other DBs

NCBI-GI:

162455139

NCBI-GeneID:

5814087

UniProt:

A9GU24

Position

9579841..9581442

AA seq 533 aa
MLVSDLVATSERVAALSRRVEKIGALAALLRRFSPAEVQIGVDWLTGRLRQGRLGLGPSV
FAEARRASPSVAQPALTLGDADAVFTEIARASGPGAGGERRAALAGLFARATDLERDFFA
RLLAGELRQERLEPVMVDAVARAARVPPASLRRAVMLAGDAAEVVKAALLEGALGLQRFS
LQLLRPVQPMLAQSADDVVTALSELRAMALEWKLDGVRVQAHKAGDEVRVFSRGLGPVTK
AVPEIVEIVRALPVRSVVLDGEALAFRPDGAPHPFQVTMRRFGRAHDAAALRAELPLRAL
FFDVLHLDGEDLLDRPGSERTAALRQVLDRSLRVPRIELPTAAEAEAFFADALAHGHEGV
IAKSLAAPYEAGRRRGTWLKVKRARTLDLVVLAAEWGTGRRRGLLSNLHIGARDPAAGGF
VLLGKTFKGMNDEVLAWQTQRLLELEIGRDADTVYVRPEIVVEVAFDGLQSSPRYPGGVA
LRSARVKRYRPDKPAGEISTMDEVRAIHAGALAGEAAEKGQAEGGGEELEDDG

NT seq 1602 nt +upstreamnt +downstreamnt
gtgctcgtttccgaccttgtcgccacctccgagcgtgtcgccgcgctctctcgccgtgtc
gagaagatcggcgcgctcgccgcgctcctgcgccgcttctcgcccgcggaggtgcagatc
ggcgtcgactggctcaccggtcggctgcgccaggggcggctcggcctcgggccttcggtg
ttcgccgaggcccgccgggcctctccttccgtcgcccagcctgcgctcaccctgggggac
gccgacgcggtcttcacggagatcgcgcgcgcctcggggccgggggccgggggggagcgc
cgcgcggcgctggcggggctgttcgcgcgcgccaccgatctcgagcgggacttcttcgcg
cggctcctcgccggcgagctccgccaggagaggctggagccggtcatggtcgacgcggtg
gcgcgcgcggcgcgggtgccgccggcctcgctgcggcgcgcggtgatgctggccggcgac
gcggcggaggtggtcaaggccgcgctcctcgagggggcgctcggcctccagcgcttctcg
ctgcagctgctccgccccgtgcagccgatgctggcgcagtcggccgacgacgtcgtgacg
gcgctgagcgagctccgcgcgatggcgctggagtggaagctcgacggcgtgcgcgtgcag
gcgcacaaggccggcgacgaggtgcgcgtcttcagccgcggcctcggcccggtcacgaag
gcggtccccgagattgtcgagatcgtccgggcgctcccggtccgctcggtcgtgctcgac
ggcgaggcgctcgcctttcgcccggacggcgcgccgcacccgttccaggtcacgatgcgc
cgcttcggccgcgcgcacgacgcggccgcgctgcgggccgagctgccgctgcgcgccctg
ttcttcgacgtgctgcacctcgacggcgaggatctgctcgaccggcccggcagcgagcgc
acggcggcgctccggcaggtgctcgaccggtcgctgcgcgtcccgcgcatcgagctgccg
acggcggccgaggccgaggcgttcttcgccgacgcgctcgcccacggccatgagggcgtg
atcgccaagtcgctcgccgcgccctacgaggcggggcggcgccgcggcacgtggctcaag
gtgaagcgggcgcgcaccctcgacctggtggtgctcgcggccgagtgggggaccggccgg
cgccgggggctgctcagcaacctgcacatcggggcgcgcgatcccgcggccgggggcttc
gtcctgctcggcaagacgttcaagggcatgaacgacgaggtgctcgcgtggcagacgcag
cggctgctggagctcgagatcggccgcgacgcagacacggtgtacgtgcggccggagatc
gtcgtcgaggtcgccttcgacggcctgcagtcgagtccgcggtaccccgggggggtcgcg
ctgcggtctgcgcgggtgaagagataccggcctgacaagcctgcaggcgagatcagcacg
atggacgaggtgcgggcgatccatgcgggtgcgctcgcgggcgaggcggccgagaaggga
caggcggagggtggaggagaggaattggaagacgacgggtga

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (15)   

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