KEGG   Streptomyces sp. CFMR 7: ABE83_09910
Entry
ABE83_09910       CDS       T04074                                 
Name
(GenBank) NAD-dependent DNA ligase LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
scz  Streptomyces sp. CFMR 7
Pathway
scz03030  DNA replication
scz03410  Base excision repair
scz03420  Nucleotide excision repair
scz03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:scz00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    ABE83_09910
   03410 Base excision repair
    ABE83_09910
   03420 Nucleotide excision repair
    ABE83_09910
   03430 Mismatch repair
    ABE83_09910
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:scz03032]
    ABE83_09910
   03400 DNA repair and recombination proteins [BR:scz03400]
    ABE83_09910
Enzymes [BR:scz01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     ABE83_09910
DNA replication proteins [BR:scz03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     ABE83_09910
DNA repair and recombination proteins [BR:scz03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     ABE83_09910
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     ABE83_09910
   MMR (mismatch excision repair)
    DNA ligase
     ABE83_09910
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      ABE83_09910
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT DNA_ligase_ZBD PTCB-BRCT HHH_5 HHH zf-TFIIB DUF6729 zf-IS66
Other DBs
NCBI-ProteinID: ALC27372
UniProt: A0A0M4DR31
Position
complement(2506888..2509158)
AA seq 756 aa
MAGEERVEQESTVPAGVRETHALLAEQIEEHRFRYYVKDQPVVSDAEFDRLMRSLEALEE
EYPQLRTPDSPTQKVAGPYVTEFTSVEHRERMLSLDNAFDADDLASWAERVAKEVGTPDH
HFLCELKVDGLAVNLTYEHGRLTRAATRGDGRTGEDITPNVRTIAEIPHRLQGEDIPALV
EIRGEVFFPMEAFEELNARLVAADDKPFANPRNAAAGSLRQKDPKVTATRPLHMVVHGIG
AHEGLTLDRLSQAYDLLHSWGLPTARHNKVVDSLEGVREFIAYYGDHRHSVEHEIDGVVV
KLDEIPLQGRLGSTSRAPRWAIAWKYAPEEVNTKLVNIRVGVGRTGRVTPYAQVEPVEVA
GSEVEFATLHNQEVVKAKGVLIGDTVVLRKAGDVIPEILGPVVDLRDGTEKPFEMPTHCP
ECGTELRPMKEADIDLRCPNARTCPAQLRERIFYLAGRKCLDIDHFGYVAAAALTCPLEP
AEPVLKDESGLFDLTIEQLLPIRAYVLDQDSGLPKRDPKTGEEKIATVFANKQGEPKKNA
VAMLEGIAAAKEAPLARVLTGLSIRHVGPVAAQELARQFRSIDRIDEATEEELADADGVG
PTIAASVKQWFAEEWHREIVRKWREAGVRMADESSDEEQGPRPLEGLTVVVTGTLTGYTR
DGAKEALQGLGAKVTGSVSKKTAFVVVGDNPGSKYDKAMQLKVPVLDEDGFAVLLEQGPD
AAREAALPVPEPVAETGPGSAADSGAATEPEAAAAE
NT seq 2271 nt   +upstreamnt  +downstreamnt
atggcgggcgaagagcgggtggagcaggagagcacggttccggcgggcgtgcgggagacc
cacgcgctgctggccgagcagatcgaggagcaccgcttccggtattacgtgaaggaccag
ccggtcgtcagcgacgccgagttcgaccggctgatgcgctccctggaggccctggaggag
gagtacccccagctccgcaccccggactccccgacccagaaggtcgcggggccctatgtc
acggagttcacctccgtcgagcaccgcgagcgcatgctctccctggacaacgccttcgac
gccgacgacctggcctcctgggccgagcgcgtcgccaaggaggtcggcacgcccgaccac
cacttcctgtgcgagctgaaggtggacgggctcgccgtcaacctcacctacgagcacggc
cggctgacccgggcggcgacccggggcgacggccgcaccggcgaggacatcacgcccaac
gtccgtacgatcgcggagatcccgcaccgcctccagggcgaggacatccccgcgctggtc
gagatccggggcgaggtcttcttcccgatggaggccttcgaggagctgaacgcccggctg
gtggccgccgacgacaagcccttcgccaacccgcgcaacgcggcggccggttcgctgcgc
cagaaggacccgaaggtcaccgccacccgcccgctccacatggtggtccacggcatcggc
gcccacgagggcctcaccctcgaccgcctctcccaggcgtacgacctcctccactcctgg
ggcctgcccaccgcccggcacaacaaggtcgtcgactccctcgaaggcgtacgggagttc
atcgcgtactacggcgaccaccggcactccgtggagcacgagatcgacggcgtcgtcgtc
aagctcgacgagatcccgctccagggacggctgggctccacctcgcgcgccccccgctgg
gccatcgcctggaagtacgcccccgaggaggtcaacaccaagctggtcaacatccgcgtc
ggcgtcggccgcaccggccgcgtcaccccgtacgcccaggtggagccggtcgaagtggcc
ggttccgaggtcgagttcgccaccctccacaaccaggaggtggtcaaggccaagggcgtc
ctcatcggtgacaccgtggtcctgcgcaaggcgggcgacgtcatcccggagatcctcggc
cccgtcgtcgatctgcgcgacggcaccgagaagccgttcgagatgccgacgcactgcccc
gagtgcggtacggagctgcgcccgatgaaggaggccgacatcgacctccgctgccccaac
gcccgtacgtgccccgcacagttgcgcgagcggatcttctatctcgccgggcgcaagtgc
ctggacatcgaccacttcggctatgtggccgccgccgccctgacctgtcccctggagccc
gccgagccggtcctcaaggacgagagcggcctgttcgacctcaccatcgagcaactgctg
ccgatccgggcgtacgtcctggaccaggacagcgggctgcccaagcgcgacccgaagacc
ggtgaggagaagatcgcgacggtcttcgccaacaagcagggcgagccgaagaagaacgcg
gtcgccatgctggagggcatcgccgccgcgaaggaagccccgctggcccgggtcctcacc
ggcctctccatccgccacgtcggacccgtcgccgcccaggagctggcccgccagttccgc
tccatcgaccgcatcgacgaggccaccgaggaggagctggccgacgccgacggtgtcggc
cccaccatcgccgcctccgtcaagcagtggttcgcggaggagtggcaccgcgagatcgta
cggaagtggcgcgaggccggggtccggatggccgacgagagctccgacgaggaacagggc
ccccgccccctcgaagggctcaccgtcgtcgtcaccggcaccctcaccggctacacccgg
gacggcgccaaggaggcgctccagggcctgggcgcgaaggtcaccggctcggtgtcgaag
aagaccgcgttcgtggtcgtcggggacaaccccggctccaagtacgacaaggccatgcag
ctgaaggtccccgtgctcgacgaggacggcttcgccgtcctgctggaacagggcccggac
gcggcacgggaggcggccctgccggttccggagccggtggcggaaacggggccggggtcg
gcggccgactccggagcggcgaccgaaccggaagcggcggccgcggagtag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (11)   
   Pfam (11)   
All databases (31)   

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