KEGG   Saccharophagus degradans: Sde_2694
Entry
Sde_2694          CDS       T00335                                 
Name
(GenBank) transcription elongation factor GreA / replication restart DNA helicase PriA
  KO
K04066  primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
Organism
sde  Saccharophagus degradans
Pathway
sde03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:sde00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    Sde_2694
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:sde03400]
    Sde_2694
Enzymes [BR:sde01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     Sde_2694
DNA repair and recombination proteins [BR:sde03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     Sde_2694
SSDB
Motif
Pfam: PriA_3primeBD PriA_C DEAD ResIII Helicase_C PriA-like_WH PriA_CRR AAA_30 AAA_22 T2SSE SLFN-g3_helicase AAA_16 zinc-ribbons_6 CFAP95 FAM76
Other DBs
NCBI-ProteinID: ABD81954
UniProt: Q21H75
Position
3419376..3421586
AA seq 736 aa
MNKLYLEIALPVPLRRTFDYLTNFQGDPNGLIGCRVQAPFGNQTLIGIIIGVKAQSETPA
DKMKDIHTIIDDTPLISHLDLQLFSWAANYYHHSLGEVLHASIPQKLRQGERQEHEQLIS
AWKHTPEGMGLPETALNRSKKQQEIHRYLLQNTQFTRSTAQRLGFSTSAIKALKDKNLIE
EILVKDSIEQVQTNNSLLNNTPLTLNQEQTAAQESVIFHRFGAYLLDGVTGSGKTEVYLQ
LVARALQAGTQALVLIPEIGLSPQTVGRFKDRFSVEIAELHSSINEAKRAEHWQAAKSGR
AKIVIGTRLAALAALNKPGIIIVDEEHDLSYKQHDGFRYSARDICVYRAKQHNIPVVLGS
ATPSLETLNNAITGRYQHLKLTQRASTATPPHIESIDIRNQQLTAGLCESAIEEIRHTLQ
RQQQALVFLNRRGFAPSLFCHHCGWQAKCTGCELPMTFHSHPRHLHCHRCDRQNGVPRAC
PSCKNQAFSHRGSGTEQIELFLAKQFPNTPVIRIDRDTTSSKKAMQKLLEPAYAGTPCIL
VGTQMLAKGHHIPGINLAVIADADQGLMSADYRGVEQVGQLVTQVAGRAGRASSTGKVLI
QTHQPDHPLMRVLIAEGYNSFAVQLLAERKHSGLPPYGYSALIRSESKRPENALAILQLI
HGAIKNTGNKHTITTIGPMAAPIEKIGNRFRFQYQLFCNSRKELHATLKAVLSEVEVKAE
ARRTRWSVDIDPVTSA
NT seq 2211 nt   +upstreamnt  +downstreamnt
atgaataagctctacctagaaatcgccctacccgttcctttgcgccgcacatttgactac
ctcaccaattttcagggtgacccaaatgggctaataggctgtcgcgtacaggcgccgttt
ggcaatcaaaccttaattggcataatcattggggtgaaggcgcagtcggaaactcctgcc
gacaaaatgaaagacattcacaccattattgatgacacaccacttatatctcacctagat
ttgcagctatttagctgggctgccaattactaccaccactctctaggcgaggtattacac
gcgtccatcccccaaaagttgcgccaaggcgaacgccaagagcacgaacaactcataagc
gcgtggaaacacacccccgaagggatgggattgccagaaacagcattaaaccgctctaaa
aagcagcaagaaatacacaggtacctgctacaaaacacacaatttacccgctccacggca
caaaggcttggtttttccacctctgcaataaaagcacttaaagacaaaaatcttatcgaa
gaaattttagttaaagactcgattgaacaagtgcaaacaaataatagcttgctcaacaat
acgccactcaccctaaaccaagagcaaacagccgcacaagaaagcgttatttttcaccgc
tttggggcctacctgcttgatggtgtaacaggcagcggcaaaaccgaagtgtacctacaa
ctggtggccagagccttacaagcaggcacacaagcacttgtacttattcctgaaataggc
ctgtctccccaaacagtaggccgatttaaagacaggtttagcgtagaaatagccgaactc
cattcctccattaacgaagccaaacgcgccgaacattggcaagcagcaaaaagcggccgt
gcaaaaatagtgataggcacgcgcctagctgccttagccgcacttaacaaacccggcatt
atcattgtggatgaagagcacgacctctcatataaacaacacgacggctttcgttattcg
gcgcgagacatatgcgtttaccgagccaaacagcacaacattcccgtggtattaggctct
gcaaccccttcactagaaaccctaaacaacgccattactggtcgctaccaacatttaaaa
ctcacccagcgagcaagcacagccacaccgcctcatatcgaaagtatcgacattcgcaac
cagcaattgacagcaggactgtgtgaatcggcaatagaagaaattaggcacaccctacaa
cgccaacagcaggcgctggtatttcttaatcgcagagggtttgccccgtcgctcttttgt
catcactgcggctggcaagccaaatgtacgggctgcgaactacctatgacctttcactcg
cacccaagacacctacactgccaccgctgcgacaggcaaaacggcgtacctcgcgcctgc
ccaagctgcaaaaaccaagcattcagccatcgcggtagtggtaccgagcaaatcgagctc
tttttggcgaagcagtttccaaatactccagtaatacgtatagatagagacaccaccagc
tctaagaaggcgatgcaaaagctattagagcccgcttacgcaggcacgccttgcatactg
gttggcacacaaatgctagccaaggggcaccatattcccggtattaacctcgctgttatt
gccgatgcagatcaaggccttatgagtgccgattatcgcggtgtagaacaagttggccaa
cttgttactcaagtggccggcagggctgggcgcgcatcgtcaacgggtaaagtacttatc
caaacccaccaaccagaccacccgttaatgcgtgtgcttattgcggaaggctacaatagc
tttgcggtgcaactgctagcagaacgcaaacattccggcctaccaccttacggatactct
gctttaattcgcagcgagtccaagcggcccgaaaacgcgcttgccatattacaactgata
catggcgcgattaaaaatactggcaacaaacacaccatcaccaccatcggcccaatggca
gcccctatagaaaaaataggcaacaggtttaggtttcaataccaacttttctgtaattca
agaaaggagcttcacgcaactttaaaagccgtgctaagcgaggtagaagttaaagcggag
gcgagaagaacgcgctggtcggtggatattgatccggtgaccagcgcttaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (44)   
   KEGG ORTHOLOGY (1)   
   RefGene (41)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (15)   
   Pfam (15)   
All databases (66)   

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