KEGG   Spiroplasma diminutum: SDIMI_v3c00640
Entry
SDIMI_v3c00640    CDS       T02741                                 
Symbol
uvrB
Name
(GenBank) excinuclease ABC subunit B
  KO
K03702  excinuclease ABC subunit B
Organism
sdi  Spiroplasma diminutum
Pathway
sdi03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:sdi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    SDIMI_v3c00640 (uvrB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:sdi03400]
    SDIMI_v3c00640 (uvrB)
DNA repair and recombination proteins [BR:sdi03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     SDIMI_v3c00640 (uvrB)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      SDIMI_v3c00640 (uvrB)
SSDB
Motif
Pfam: UvrB_inter UvrB Helicase_C ResIII UVR DEAD P-loop_SecA AAA_7 AAA_22 AAA_30 UB2H TrwB_AAD_bind DUF87 AAA HerA_C AAA_19
Other DBs
NCBI-GeneID: 16853957
NCBI-ProteinID: AGR41768
UniProt: S5MDH1
Position
64101..66086
AA seq 661 aa
MENKNIKFQLVTDYKPGGDQPNAIKGLINGLKNNVKHQVLMGATGTGKTFTMANVIQEIN
KPTLVLAHNKTLAMQLYIELKELFPNNKVEYYVSNFDFYQPEAYIPSRDLYIDKDAKRNN
DLEMMRLSSMNALMIRKDTIVVASVACIYATQDPKEYGDVFFELQVGQVLSKKELLTFLV
QTGYTRDENDLAMGYFSAKGDVIRIAPSWTDKYHIRISMFGDEIEAIEMIDILNNTVIEK
LRMFTVYPAAAYVTNFDKMKLVVENIGKELEKRVLWFQEQKKFIEADRLMKRTKYDMETM
SEFGICSGIENYSPHLDFRAPGVPPFTLIDYFGDDFLTIIDESHMMIPQLNAMYNTDRSR
KETLIEHGFRLPSAIDNRPLKFEEFAGKLKNVIYTSATPGPYELELVNNEVVEQIIRPTG
LVDPQIEIRSTINQMNDIVDEINKVIAKNQKVFITTITIRISEDITAYLQSRNLKVAYLH
SELKTLERNQVLTDLRKGVYDVIVGVNLLREGLDIPEVSLVCILDADKQGFLRNTRSLIQ
TIGRAARNSEGRVIFYADSTSQAMKEAIEETDRRRKIQEDYNKANGIIPKTIIKKISDVI
ADSNIRNKVDELKKLKKKEKEKKKENLIEELRKQMLSAAKEQNYEKAAEIRDLILELQAE
G
NT seq 1986 nt   +upstreamnt  +downstreamnt
atggaaaataaaaatataaaattccagttagtcacagactataaacctggaggagatcaa
cctaatgcaataaaaggtttgattaatggtctaaaaaataatgtaaagcaccaggtatta
atgggagcaactggaactggaaaaacatttacaatggcaaatgttattcaagaaattaat
aagccaacgttagttttagcacataataaaactttggcaatgcaattatatattgagtta
aaagaattatttcctaataataaagttgaatattatgtttctaactttgacttttatcaa
ccagaagcatatataccttcaagagatttatatatcgataaagatgcaaaaagaaataat
gaccttgaaatgatgagactaagttctatgaatgcactaatgattagaaaagatacaata
gtagttgcatcagttgcatgtatttatgcaactcaagatccaaaagagtatggagatgta
ttctttgaattacaagttggacaagttttatcaaaaaaggaattacttacttttttagtt
caaactggttatacaagagatgaaaacgatttagcgatgggttactttagtgcaaaggga
gatgttattagaattgctccaagttgaacagataagtatcatattagaatctctatgttt
ggtgacgaaattgaagcaattgaaatgattgatattttaaacaatactgtaattgaaaaa
ttaagaatgtttacagtttacccagcagcagcgtatgtaacaaactttgacaaaatgaaa
ttagttgttgaaaatattggaaaagaactagaaaaaagagtgctgtgatttcaagaacaa
aaaaaatttattgaagcagatagactaatgaaaagaacaaaatatgatatggaaacaatg
agtgagtttggaatttgtagtggtatagaaaactattctccacatttagattttagagca
ccaggagttcctccatttacattaattgattattttggtgacgacttcttaacaataatt
gatgagtcacacatgatgattccacaattaaatgcaatgtacaatactgatagaagtaga
aaagaaactttaattgaacatggttttagattaccaagtgcaattgataatagacctttg
aaatttgaagagtttgcaggaaaattaaaaaatgtaatttatacttctgcaactccagga
ccatatgaacttgaattggtaaataatgaagtagtagaacaaattattagaccaacagga
ttagttgacccacaaattgaaattcgttcaacaataaatcaaatgaacgatattgtcgat
gagataaataaagtaattgcaaaaaatcaaaaagtatttattacaacaattactattaga
atttctgaggatataactgcatacttacaatcaagaaacttaaaagttgcttacttacat
tcagaattgaaaactctagaaagaaatcaagtacttacagatttaagaaaaggagtttat
gatgttattgttggagttaacttattaagggaaggtttagatattcccgaagttagttta
gtttgtattttggatgcagataaacaaggatttttaagaaacacaagaagtttaattcaa
acaattggtagagctgcaagaaactcagaaggtagagtaattttttatgcagattcaact
tcacaagctatgaaagaagctattgaagaaactgatagaagaagaaaaattcaagaggac
tataataaagcaaatggaataattccaaaaacaataattaaaaaaattagtgacgttatt
gctgattcaaatattagaaataaagttgatgaactaaaaaaattaaagaaaaaagaaaaa
gaaaagaaaaaagaaaacttgattgaagaattaagaaaacaaatgttatctgctgcaaaa
gaacaaaattatgaaaaggcagctgaaattagagatcttattttagaattacaagcagaa
ggatag

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (16)   
   Pfam (16)   
All databases (25)   

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