KEGG   Sulfuricella denitrificans: SCD_n01794
Entry
SCD_n01794        CDS       T02857                                 
Name
(GenBank) ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
sdr  Sulfuricella denitrificans
Pathway
sdr03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sdr00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    SCD_n01794
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sdr03019]
    SCD_n01794
   03016 Transfer RNA biogenesis [BR:sdr03016]
    SCD_n01794
Enzymes [BR:sdr01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     SCD_n01794
Messenger RNA biogenesis [BR:sdr03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     SCD_n01794
Transfer RNA biogenesis [BR:sdr03016]
 Prokaryotic type
  tRNA degradation factors
   SCD_n01794
SSDB
Motif
Pfam: RNB CSD2 OB_RNB S1 RNase_II_C_S1 HTH_12 CSD OB_Dis3 Rrp44_S1
Other DBs
NCBI-ProteinID: BAN35606
UniProt: S6AHI1
Position
complement(1814068..1816428)
AA seq 786 aa
MSTKKIRSKDPFLERERAQYEHPLPSREYILQLLTEQGVPVAENKLAKILEIQEDEVDVF
SRRLRAMERDGQIMRNRKHEVCVVDKLDLIKGKVQGHKDGFGFLVPDDGGEDLFLGPSQM
QKVLHGDRVMARMIGEDRRGRPEGSIVEVLERVNTRIVGRLFNEHGILRAVAENKRISQD
FLIPPGGDMGAQPGQVVMIEIIEQPSKHAKPVGTVVEILGNYTDPGMEIEIALRKHDLPH
VFPPEVENLAKKFSPKVLKKDMAGREDLRELPLVTIDGETARDFDDAVFCRPLDKGWKIL
SKGGWKLYVAIADVSHYVQPKDALDLEAFDRGNSVYFPRRVIPMLPEELSNGLCSLNPHV
ERLCMVCEMDISGNGDIKKYKFYPAVMNSHQRFTYTTVAAMLADPKGKEANEHKDQLPHV
QELHKLFKVLLKARGKRGAIDFETIETQMIFNDQGKIERIVPVHRNDAHRVIEECMLAAN
VCASDFLQKNEHPTLYRIHEGPTPEKLEGLREFLKEFGLPLAGGDDPHAKDYAKLLSKVK
GRPDEQLLQTVMLRSLRQAVYSPDNVGHFGLAYESYTHFTSPIRRYPDLLVHRAIKAVLN
GDKYKPGKWAELGIHCSQTERRADEATRDVNDWLKCFYMQDKVGETFDGTVASVTGFGVF
VALDNIYVEGLVHITELGSDYFHFDAAKHQLLGERTGQRFRLGDRLKVKVARVDLETIKI
DFVMAEPVVKGSLSGRQHTSRETAGGKPRAATRAAKGTREKEGGRGVAPKVEESGKKPRR
KRKPTH
NT seq 2361 nt   +upstreamnt  +downstreamnt
ttgtcaacgaagaaaattagatccaaagaccccttcctcgagcgtgaacgtgctcagtac
gagcatccattgccgagtcgggaatatatattgcagcttcttaccgagcagggtgttcct
gttgcagagaataaactggccaagatcctggaaattcaggaagacgaggtggatgtattc
agccgtcgtctcagagcaatggagcgggatggccagatcatgcgcaaccgcaaacatgaa
gtttgcgtggtggacaagctggacttgatcaagggcaaggtgcagggacacaaggacggc
ttcggcttcctggtgcctgatgatggcggagaggatttgttcctgggcccgagccagatg
cagaaggtattgcacggcgaccgcgtgatggcgcggatgatcggcgaagaccggcgcggt
cgtcccgaaggcagcatcgtcgaggtgttggagcgggttaatacgcgcattgtgggtcgc
ctcttcaacgagcatggcatccttcgggcggtggctgaaaacaaacgcatcagccaggac
ttcctgattccgcccggtggcgacatgggcgcccagcccggccaggtggtgatgatagaa
atcatcgaacagccaagcaagcacgccaagccagtcgggacagtggtagagatcctcggt
aattacaccgaccccggcatggaaattgaaatcgcactgcgcaagcacgatttgccgcat
gtgtttccgcccgaggtggaaaatctggcgaagaaattctcgccgaaagtgttgaaaaaa
gacatggcagggcgcgaggatctgcgcgagttgccgctggtcaccatcgacggcgagacc
gcccgcgatttcgacgatgccgtgttctgccgtccgctggacaagggctggaagatactc
agcaagggcggctggaagctgtacgtggcgatcgccgacgtcagtcattacgttcagccc
aaggacgcgctcgatctggaagcgttcgatcgtggcaactcggtgtactttccgcgtcgt
gttatcccgatgttgccggaggaattgtccaacggcctgtgttctctcaacccccacgtc
gaacggctgtgcatggtgtgcgagatggacatcagcggcaacggtgatatcaagaaatac
aagttctacccagcggtgatgaactcgcaccagcgctttacctacaccacggtagcggcg
atgctggccgaccccaagggcaaagaagccaatgaacacaaggaccagttgccgcatgtc
caggagttgcacaagctgttcaaggtgctgctcaaggcgcgcgggaaacgcggcgcgatc
gatttcgagactatcgaaacccagatgattttcaacgatcagggtaagatcgagcgcatt
gtgccggtgcatcgcaacgatgcccaccgcgtgatcgaggaatgtatgctggcggccaac
gtgtgcgcatcggatttcctgcagaagaacgagcacccgaccctgtaccgcatccacgag
ggtccgaccccggagaagctcgaagggctgcgcgaatttctcaaggagttcggcttgcct
ctggccggcggcgacgatccccacgccaaggactacgccaagctgctgtccaaggtcaaa
gggcggccggacgagcagttgctgcaaacggtcatgctgcgctcgttgcggcaggcggtc
tacagcccggacaacgtcggccatttcggcctggcctacgagtcctacacccatttcact
tcgcctattcgccgctatccggacttgctggtgcaccgtgccatcaaggccgtgctgaat
ggcgataaatacaagccgggtaaatgggcggaactgggcatccactgttcccagaccgaa
cgtcgtgccgatgaggcgacgcgcgacgtcaacgactggctcaagtgcttctacatgcag
gacaaggtgggcgagactttcgacggtaccgtcgccagcgtcaccggctttggcgtgttc
gtcgcgctcgacaatatctatgtcgaaggcctagtgcatatcaccgagctgggcagcgat
tatttccatttcgatgccgccaagcaccagttgctgggcgagcgaaccggacagcgcttc
cggctgggcgatcggctgaaggtcaaggtggcgcgggtcgatctcgaaaccatcaagatc
gacttcgtcatggcggagcctgtcgtcaaagggtcgttatcgggcaggcagcatacgtcc
agggaaacggcgggcggcaagccgcgcgctgctacgcgtgcggctaaaggaacacgggaa
aaagaaggcggcaggggggtagcccccaaggtggaggaaagtggcaagaaaccccgccgc
aaacggaagcccacgcattaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (22)   
   KEGG ORTHOLOGY (1)   
   RefGene (19)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (39)   

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