KEGG   Shigella dysenteriae Sd197: SDY_0082
Entry
SDY_0082          CDS       T00306                                 
Symbol
yabO
Name
(GenBank) conserved hypothetical protein
  KO
K06177  tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
Organism
sdy  Shigella dysenteriae Sd197
Brite
KEGG Orthology (KO) [BR:sdy00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:sdy03009]
    SDY_0082 (yabO)
   03016 Transfer RNA biogenesis [BR:sdy03016]
    SDY_0082 (yabO)
Enzymes [BR:sdy01000]
 5. Isomerases
  5.4  Intramolecular transferases
   5.4.99  Transferring other groups
    5.4.99.28  tRNA pseudouridine32 synthase
     SDY_0082 (yabO)
    5.4.99.29  23S rRNA pseudouridine746 synthase
     SDY_0082 (yabO)
Ribosome biogenesis [BR:sdy03009]
 Prokaryotic type
  rRNA modification factors
   23S rRNA modification factors
    SDY_0082 (yabO)
Transfer RNA biogenesis [BR:sdy03016]
 Prokaryotic type
  tRNA modification factors
   Psudouridine synthases
    SDY_0082 (yabO)
SSDB
Motif
Pfam: PseudoU_synth_2
Other DBs
NCBI-ProteinID: ABB60320
ShiBASE_China: SDY0082
UniProt: Q32K37
Position
complement(78719..79378)
AA seq 219 aa
MGMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESV
HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP
NRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRF
YASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF
NT seq 660 nt   +upstreamnt  +downstreamnt
atggggatggaaaactacaatccaccgcaggaaccctggttggttatcctgtatcaggat
gaccacattatggtggtcaacaagccgagcggtttgttgtctgtgccgggtcgtctggaa
gagcacaaagacagcgtgatgacgcgcattcagcgtgattatccgcaggcagaatcggtg
catcgtctggatatggctaccagcggcgtgattgtagtggcgctgaccaaagccgcggag
cgggagttaaaacgccagttccgcgagcgcgagccgaaaaagcagtatgtggcccgcgtc
tgggggcatccatcccctgcggaaggtctggtagatctgccgctgatttgcgactggcca
aaccgcccgaaacagaaagtctgttacgaaacaggtaaacctgcgcagacggaatatgaa
gtggtggagtatgcggcggataacacggcaagagtggtgttaaaaccgattaccgggcgt
tcgcatcaattgcgtgtgcatatgctggcgctgggtcatccgattctcggcgatcgtttt
tatgcatcaccggaagcgagagcgatggcaccgcgtttgttgctacatgcagagatgttg
acgattacccatccggcgtatggcaatagtatgacgtttaaagcgccagcggatttttaa

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