KEGG   Salmonella enterica subsp. enterica serovar Choleraesuis: SCH_1014
Entry
SCH_1014          CDS       T00240                                 
Symbol
ycbY
Name
(GenBank) putative N6-adenine-specific DNA methylase
  KO
K12297  23S rRNA (guanine2069-N7)-methyltransferase / 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.264 2.1.1.173]
Organism
sec  Salmonella enterica subsp. enterica serovar Choleraesuis
Brite
KEGG Orthology (KO) [BR:sec00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:sec03009]
    SCH_1014 (ycbY)
Enzymes [BR:sec01000]
 2. Transferases
  2.1  Transferring one-carbon groups
   2.1.1  Methyltransferases
    2.1.1.173  23S rRNA (guanine2445-N2)-methyltransferase
     SCH_1014 (ycbY)
    2.1.1.264  23S rRNA (guanine2069-N7)-methyltransferase
     SCH_1014 (ycbY)
Ribosome biogenesis [BR:sec03009]
 Prokaryotic type
  rRNA modification factors
   23S rRNA modification factors
    SCH_1014 (ycbY)
SSDB
Motif
Pfam: UPF0020 THUMP Methyltrans_SAM Cons_hypoth95 Methyltransf_31 Methyltransf_25 MTS Methyltransf_11 Methyltransf_15 Methyltransf_24 N6_Mtase
Other DBs
NCBI-ProteinID: AAX64920
UniProt: Q57QU1
Position
1130498..1132606
AA seq 702 aa
MNSLFASTARGLEELLKTELEKLGAVGCQVVQGGVHFQGDTRLIYQSLMWSRLASRIILP
MGECKVYSDLDLYLGVQAINWTEIFNLGATFAVHFSGLNDTIRNSQYGAMKVKDAIVDAF
TRKNLPRPNVDRESPDLRINVWLNKETASIALDLSGDGLHLRGYRDRTGLAPIKETLAAA
IVMRSGWQPGTPLLDPMCGSGTLLIEAAMWATDRAPGLHRGHWGFSGWAQHDETIWQEVK
AEAQTRARKGLAEYSSHFYGSDSDARVIERARSNARRAGIGELITFEVKDVAQLSNPLPK
GPYGTVISNPPYGERLDSEPALIALHSLLGRTMKNQFGGWNLSLFSASPDLLGSLQLRAD
KQFKAKNGPLDCVQKNYHIAETTADSKPATVAEDYANRLRKNLKKLEKWARQEGIECYRL
YDADLPEYNVAVDRYGDWAVIQEYAPPKTVDAQKARQRLFDIIAATLSVLGIPPNKLVLK
TRERQKGKNQYQKMSEKGEFLEVSEYNARLWVNLTDYLDTGLFLDHRIARRMLGEMSKGK
DFLNLFSYTGSASVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLSGRAHRLIQADCLG
WLREANEQFDLIFIDPPTFSNSKRMEESFDVQRDHVALMKDLKRLLRKGGTIMFSNNKRG
FRMDLEGLAELGLTAQEITQKTLSPDFARNRQIHNCWLIRAA
NT seq 2109 nt   +upstreamnt  +downstreamnt
atgaattctctgtttgccagtacggcccgcgggctggaagagctgttaaaaactgaactg
gaaaaactgggcgctgtagggtgtcaggttgttcagggtggggtccattttcagggcgac
acgcggcttatttaccagagcctgatgtggagccgcctggcctcgcgtattatcctgccg
atgggtgagtgcaaggtctacagcgatctcgatctttacctcggcgttcaggcgataaac
tggacagagatttttaatcttggcgcgacgtttgcggtgcatttcagcggcctgaacgac
accatccgtaatagtcagtatggcgcgatgaaagttaaagacgcgattgtcgatgcgttt
acgcggaaaaatcttccgcgtccaaatgtggaccgcgaatcgccggacctccgtattaac
gtctggctgaataaagaaactgccagcattgcgctggatctcagtggtgatggcctgcac
ctgcgcggttatcgcgatcgcaccgggctggcgccaattaaagagacgctggcggcagcg
attgttatgcgttccggctggcagccaggtacaccgctgctcgaccctatgtgtggttcg
gggacactgttgattgaggccgcgatgtgggcgaccgatcgcgcgccgggactgcaccgt
ggtcactggggatttagcggctgggcgcagcatgacgagactatctggcaggaagtgaaa
gccgaagcgcagacccgggcgcgtaagggactggcagagtattcctctcatttctacggt
tccgacagcgatgcgcgtgtcattgagcgggcgcgcagcaacgcccgtcgcgccggtatc
ggggagcttatcacctttgaagtgaaagatgtggcgcaactgagtaatccattgccgaaa
ggcccgtatggtacggtgatcagtaacccgccttacggcgaacgtctggacagcgaaccg
gcgctgattgcgttgcacagcctgctgggccgtaccatgaaaaatcagtttggcggctgg
aacctgtcgctgttcagcgcttcgcccgatctgctgggcagcctgcaattacgtgccgac
aaacagtttaaagccaagaatggcccgctggactgcgtgcagaaaaactatcatattgcg
gaaaccacggcggacagtaagccggcgacggtggcggaagattacgctaatcgcctgcgt
aaaaatcttaaaaagctggagaaatgggcgcgccaggaagggattgaatgctatcgcttg
tatgatgccgacctgccggaatataacgtggcggtagaccgttacggcgactgggcggtg
attcaggaatatgcgccgccgaaaacggtggatgcgcaaaaagcgcggcagcgtctgttc
gatattattgcggcaaccttgtcagtgctcggtattccgccgaataaactggtgttaaaa
acccgtgaacggcaaaaaggaaaaaaccagtatcagaaaatgagcgagaagggcgagttc
cttgaggtcagcgaatataatgcgcgcttatgggtaaatctgacggattatctcgacacc
ggtctgttcctcgatcaccgtattgcccgcagaatgctgggagaaatgagcaaaggcaaa
gatttcctgaatctcttttcttataccggcagcgccagcgtacatgcgggtctgggcggc
gcgcgcagcaccacaacggtggatatgtcccgcacctatctggagtgggccgaacgtaat
ttgcgtctgaacggactgagcggccgcgcgcatcgcctgattcaggccgactgcctgggc
tggctgcgcgaggcgaatgaacagttcgatttgatctttatcgatccgccgacgttctct
aactcaaaacgtatggaagagtcgtttgatgttcagcgcgatcatgtcgcgttaatgaaa
gatttaaaacgcctgctgcgtaaaggcggcaccatcatgttctcaaataataagcgcgga
ttccgtatggatctggaagggctggctgagctggggcttaccgcacaagaaattacgcaa
aaaacgctttccccggattttgcccgtaaccgtcagatccataactgctggctgatccgc
gccgcctga

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Ontology (3)   
   KEGG BRITE (3)   
Chemical substance (4)   
   KEGG COMPOUND (4)   
Chemical reaction (3)   
   KEGG ENZYME (2)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (11)   
   Pfam (11)   
All databases (27)   

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