KEGG T03493: CY43

Salmonella enterica subsp. enterica serovar Typhimurium 138736: CY43_18290

Entry

CY43_18290        CDS       T03493

Name

(GenBank) RNA ligase

K14415

tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]

Organism

seni Salmonella enterica subsp. enterica serovar Typhimurium 138736

Brite

KEGG Orthology (KO) [BR:seni00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:seni03016]
    CY43_18290
Enzymes [BR:seni01000]
6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.8  3'-phosphate/5'-hydroxy nucleic acid ligase
     CY43_18290
Transfer RNA biogenesis [BR:seni03016]
Eukaryotic type
  tRNA spricing factors
   tRNA splicing ligase complex
    CY43_18290
Prokaryotic type
   tRNA splicing ligases
    CY43_18290

SSDB

Motif

Pfam:

RtcB DUF4514

Other DBs

NCBI-ProteinID:

AHX79215

UniProt:

A0A0M2J019

Position

complement(3714726..3715940)

AA seq 404 aa
MNYELMTTQNAPVKMWTKGVPVEDDARQQLINTAKMPFIFKHIAVMPDVHLGKGSTIGSV
IPTKGAIIPAAVGVDIGCGMNALRTSLTAADLPENLADLRSAIEAAVPHGRTTGRGHRDV
GAWGNPPANVNEKWAQLEAGYQWLTQKYPRFLNTNNYKHLGTLGTGNHFIEICLDETDRV
WIMLHSGSRGIGNAIGTYFIGLAQQEMQEQLETLPSRDLAYFNEGSEYFDDYLKAVHWAQ
QFASLNREAMMENALAALQRCVEKPIALDMDEINCHHNYVQKEQHFGEEIYVTRKGAVSA
RRGEFGIIPGSMGAKSFIVRGLGNEESFCSCSHGAGRVMSRTKAKKLFSVDDQIRATAHV
ECRKDADVIDEIPMAYKDIDAVMAAQSDLVEIMYALRQVVCVKG

NT seq 1215 nt +upstreamnt +downstreamnt
atgaattacgaattaatgaccacccagaacgcaccggtaaaaatgtggaccaaaggcgta
ccggtagaagacgatgcccgtcagcagctgatcaatacggcgaaaatgccgtttattttc
aaacatattgccgttatgccggatgtgcatttggggaaaggatcgaccatcggtagcgtg
atcccgacgaaaggggcgattattccggcggcggtgggcgtggatatcggttgtggaatg
aacgcgctgcgtaccagcttaacggcggccgatctgccggaaaatctggcggatctgcgt
agcgccatagaggccgctgtgcctcacgggcgtaccaccggacgcgggcatcgcgatgtg
ggcgcatggggaaacccgcccgccaacgttaatgaaaaatgggcgcaactggaagcggga
tatcagtggttaacgcaaaaatatccgcgctttttgaataccaataactataagcacctg
ggaacgttgggaaccggtaaccactttattgagatctgtctggatgaaaccgatcgggta
tggatcatgctgcactccggttcgcgcgggatcggtaacgccatcggcacctattttatc
ggcctggcgcagcaagaaatgcaggagcagttagaaacgctgccgtcccgcgatctggcg
tattttaatgaaggaagcgaatattttgacgattacctgaaagcggtacactgggcacaa
caattcgccagcctgaaccgcgaggcgatgatggaaaacgcgctggcggcgctccagcgc
tgcgtggaaaaaccgatcgccctcgatatggacgagatcaactgccaccataactatgtg
caaaaagagcagcactttggcgaagagatctatgtgacgcgtaaaggggctgtttcggcg
cggcgcggtgagttcggtatcattcccggttcgatgggggcgaaaagctttatcgtgcgc
gggctgggtaacgaagagtcgttctgttcgtgcagccacggcgccggacgtgtgatgagc
cgaacgaaagcgaagaaactgtttagcgttgacgatcaaattcgtgccaccgcgcatgtc
gaatgccgtaaagatgcggacgtgatcgacgagatcccaatggcgtataaagatattgat
gcggtgatggcggcgcagtccgacctggttgaaatcatgtacgccctgcggcaggtggtg
tgcgttaaaggatag

All links

Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (11)   

Download RDF

DBGET integrated database retrieval system