KEGG   Salmonella enterica subsp. enterica serovar Javiana: CFSAN001992_12070
Entry
CFSAN001992_12070 CDS       T02479                                 
Symbol
hfq
Name
(GenBank) RNA-binding protein Hfq
  KO
K03666  host factor-I protein
Organism
senj  Salmonella enterica subsp. enterica serovar Javiana
Pathway
senj02024  Quorum sensing
senj03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:senj00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CFSAN001992_12070 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    CFSAN001992_12070 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:senj03019]
    CFSAN001992_12070 (hfq)
   03036 Chromosome and associated proteins [BR:senj03036]
    CFSAN001992_12070 (hfq)
Messenger RNA biogenesis [BR:senj03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     CFSAN001992_12070 (hfq)
Chromosome and associated proteins [BR:senj03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    CFSAN001992_12070 (hfq)
SSDB
Motif
Pfam: Hfq LSM
Other DBs
NCBI-ProteinID: AGF82716
Position
complement(2434729..2435037)
AA seq 102 aa
MAKGQSLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAIS
TVVPSRPVSHHSNNAGGGASNNYHHGSNAQGSTAQQDSEETE
NT seq 309 nt   +upstreamnt  +downstreamnt
atggctaaggggcaatctttacaagatccgttcctgaacgcattgcgtcgggaacgtgtt
ccagtttctatttatttggtgaatggtattaagctgcaaggtcaaatcgagtcctttgat
cagttcgtgatcctgttgaagaacacggtcagccagatggtttataagcacgcgatttct
actgttgtcccgtctcgcccggtttcccatcacagcaacaatgccggtggcggcgccagc
aataactaccatcacggtagcaacgcgcagggttctactgcgcaacaggacagcgaagag
actgaataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (2)   
   Pfam (2)   
All databases (11)   

Download RDF
DBGET integrated database retrieval system