KEGG   Prodigiosinella confusarubida ATCC 39006: Ser39006_002205
Entry
Ser39006_002205   CDS       T05290                                 
Name
(GenBank) DNA polymerase I
  KO
K02335  DNA polymerase I [EC:2.7.7.7]
Organism
sera  Prodigiosinella confusarubida ATCC 39006
Pathway
sera03030  DNA replication
sera03410  Base excision repair
sera03420  Nucleotide excision repair
sera03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:sera00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Ser39006_002205
   03410 Base excision repair
    Ser39006_002205
   03420 Nucleotide excision repair
    Ser39006_002205
   03440 Homologous recombination
    Ser39006_002205
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:sera03032]
    Ser39006_002205
   03400 DNA repair and recombination proteins [BR:sera03400]
    Ser39006_002205
Enzymes [BR:sera01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     Ser39006_002205
DNA replication proteins [BR:sera03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     Ser39006_002205
DNA repair and recombination proteins [BR:sera03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA polymerase I
     Ser39006_002205
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Ser39006_002205
SSDB
Motif
Pfam: DNA_pol_A 5_3_exonuc_N DNA_pol_A_exo1 5_3_exonuc HHH HHH_5
Other DBs
NCBI-ProteinID: AUH03055
UniProt: A0A2I5T2D4
Position
complement(479501..482290)
AA seq 929 aa
MAQITENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLLLQYHPSHVAV
VFDAKGKTFRDELFEDYKSHRPPMPDDLREQIEPLHRMVTAMGLPLLVVSGVEADDVIGT
LSLQAERAGIPVLISTGDKDMAQLVTSNITLINTMTNSILGPEEVCNKYGIPPELIIDFL
ALMGDSSDNIPGVPGIGEKTAQALLQGLGGLDSLYENLDKIAGLSFRGAKTIAAKLEQHK
EIAYLSYKLATIKTDVELELNCDQLTVNEPNVVELRDLFGHYEFKRWLIDIESGTWLQDK
KSNLAVPAVIKKMEEKTQEEKVSVLSRDNYVTILDEKTLQDWITRLKSSEVFAFDTETDS
LDTLAANLVGMSFAIKPGEAAYLPLAHDYLDAPEQLDRTKVLAALKPLLEDASLLKIGQN
LKFDKGVMMRHGIELRGIAFDTMLESYVLDSVAGRHDMDSLSARYLNHKTISFEEVAGKG
KNQLTFNQIALEQAAPYAAEDADVTLHLHQKLWEQLKQQPELRKVFQDIDMPLVPVLSRM
ERTGVLIDTTILAEHSRELTQRLAELEVKAYELAGEEFNLSSPKQLGAILYEKLQLPVIK
KTPKGAPSTNEEVLAELALDYPLPKLLLEHRGLAKLKSTYTDKLPLMINPLTKRVHTSYH
QAVTATGRLSSSDPNLQNIPVRNDEGRRIRQAFIAPKGYSIMAADYSQIELRIMAHLSKD
AGLLKAFAEGKDIHRATASEVFGIPLDNVTSEQRRSAKAINFGLIYGMSAFGLSRQLNIP
RKESQRYMDLYFERYPGVQHYMERTRQQAAAQGYVSTLDGRRLYLPDIHSRNAMGRKAAE
RAAINAPMQGTAADIIKKAMIAIDDWLQQQEEPLIKMIMQVHDELVFEVHDSVLDVARQQ
IKALMEGSMQLDVPLLVAVGTGQNWDQAH
NT seq 2790 nt   +upstreamnt  +downstreamnt
atggctcagattactgaaaaccctttgattctggtggatggttcatcctatttatatcgt
gcttatcatgcttttcccccgttaaccaatagcgcaggtgaacctactggggcgatgtat
ggtgtacttaacatgctgcgaagcttattactccagtatcatcccagccatgtggcggtg
gtgtttgatgctaaaggtaaaacgtttcgtgatgaactatttgaagattacaaatctcac
cgtcctccgatgccagacgatctgcgcgaacagatagagcctttacaccgtatggtgacg
gcgatggggttacctttgttggtggtttctggtgtagaggcagatgatgttatcggcact
ctttctttacaagcagaacgagccggtataccggtattgattagtaccggtgataaagat
atggctcagttggttacatccaatatcacgctgatcaatacgatgaccaatagtattctt
ggtcctgaagaagtgtgcaataaatatggtattcctccagagttgattatcgattttctt
gccctgatgggagactcttccgataacattcctggcgtacccgggatcggtgaaaagacc
gcgcaggcgttgttacaaggattgggcggattggattcactgtatgaaaatctggataaa
attgctggtttgtcttttcgtggggcgaaaaccatagcggccaagctagaacagcacaaa
gagatcgcctatctctcctataaattggccactatcaaaacggatgttgaacttgaattg
aattgcgatcaattaactgttaatgagccaaatgttgttgaactgagagatctgtttggt
cattacgaatttaagcgttggttaattgatattgaatccggaacatggttacaggataaa
aaaagtaacctggccgtgccggcagtaataaaaaagatggaagaaaagacgcaagaagaa
aaagtaagcgttctgtctcgagacaattacgtcactattctggatgaaaaaaccttacag
gactggataacgcgtttaaagagctctgaggtgtttgcttttgatacggaaacagacagc
ctggacacccttgctgctaatctggtagggatgtcattcgcgattaaaccgggtgaggct
gcatatctgcccttggctcacgactatctggatgcacctgaacagctcgatcgtacaaag
gtattggccgcactcaaaccgctgctggaagatgccagcttactgaagattggtcagaat
ctaaagtttgataagggtgtgatgatgcgccatggtattgagctacgcggtattgctttt
gataccatgctggaatcctatgtgttggatagtgttgctggccgtcatgatatggacagc
ctgtctgcgcgttatttgaaccacaaaactattagttttgaagaagttgccggaaaaggg
aaaaaccagctaactttcaatcagattgcattggaacaggctgcaccctatgctgctgag
gatgctgacgtcactttgcatctgcaccagaaactatgggaacagctgaagcagcaacct
gaattgcgcaaagtttttcaggatatagatatgccactggtgccggtgttatcccggatg
gaacgcactggggtgctgattgatactactattctggcagagcattcgcgggaactgaca
caacgcctggcggagttggaagtgaaagcgtatgagcttgcaggagaggaatttaattta
tcttcccccaaacaattaggcgctattctttatgaaaaactgcaactgccggttatcaaa
aaaaccccgaagggcgcaccttccaccaatgaagaagtgttggctgagttagcgctggac
taccctttgccaaagcttcttttggaacatcgtgggctggcaaaactgaaatccacttat
accgataaattaccgttgatgattaacccgctaactaaacgagtacatacctcttatcat
caggcagtaacagcaacgggacgtttgtcttccagtgaccctaacttgcagaatattcca
gtccgtaatgatgaaggtcgtcgtattcgtcaggcatttattgcgccgaaaggatacagc
attatggcggcggactactcgcagattgagttgcggattatggcgcacctttctaaggat
gctggattgcttaaggcgtttgcagaaggtaaggatattcaccgcgcaacggcctctgag
gtgttcggtatcccacttgataatgtcaccagcgaacagcggcgaagtgccaaggcaatt
aactttggtttgatttatggtatgagtgcctttgggttatcgcgccagctaaatattccg
cgtaaagaatctcagcgttacatggatctttacttcgagcgttatccaggtgtacagcat
tatatggaacggacacgtcagcaggcggccgcacaaggatatgtgtcgacgctggacggt
cgacgtctctatttaccggatattcactcccgtaacgctatgggccgtaaagcggctgaa
cgagcggcgattaacgcgcctatgcaagggaccgctgcggatattattaaaaaagcgatg
atcgcgattgacgattggttacagcagcaggaagaaccgttaatcaaaatgataatgcag
gtccatgatgaactggtttttgaggtgcatgattccgtattggacgtggccaggcagcaa
attaaagcgctgatggaagggagtatgcaattagacgtgccgttgctggtagctgttggt
actggtcaaaactgggatcaggcgcattaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (20)   

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