KEGG   Shewanella frigidimarina: Sfri_0989
Entry
Sfri_0989         CDS       T00395                                 
Name
(GenBank) NusA antitermination factor
  KO
K02600  transcription termination/antitermination protein NusA
Organism
sfr  Shewanella frigidimarina
Brite
KEGG Orthology (KO) [BR:sfr00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:sfr03021]
    Sfri_0989
   03009 Ribosome biogenesis [BR:sfr03009]
    Sfri_0989
Transcription machinery [BR:sfr03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    RNA polymerase-associated proteins
     Sfri_0989
Ribosome biogenesis [BR:sfr03009]
 Prokaryotic type
  rRNA transcription factors
   Sfri_0989
SSDB
Motif
Pfam: NusA_N KH_5 HHH_5 S1 DUF2187
Other DBs
NCBI-ProteinID: ABI70842
UniProt: Q086H3
Position
1154346..1155845
AA seq 499 aa
MNKEILLVAEAVSNEKGLPREKIFEALEIALATATKKKYEGDIEVRVAIDRKTGHYDTFR
RWMVVDDQGEALENPYSEITFEAARYEEPEIQVGEFIEDQIDSVAFDRITTQTAKQVIVQ
KVREAERAQIVEQFIEREGEIVTGVVKKSTRESVVVDLGNNADGVLFKEDLISRESFRPG
DRVRALLYSVRPEARGAQLFLTRSKAEMLIELFRVEVPEIYDELIEVMGAARDPGARAKI
AVKSNDRRIDPIGACVGMRGARVQAVSNELGGERVDIVLWDDNPAQYVINAMAPADVASI
IVDEDNHSMDIAVEADSLAQAIGRNGQNVRLATQLTGWELNVMTVEDMNKKHQAESAKVI
DLFVAYLDVDKDFAAVLADEGFTSLEEIAYVPESELLAVEGFDEGIVEALRERAKAAIST
RALASEEALDGAEPSDDLLALEGLERHLAYVLASKGVVTLEDLAEQGIDDLIDIEELTEE
KAGELIMAARNICWFGEEA
NT seq 1500 nt   +upstreamnt  +downstreamnt
atgaataaagagatcctgctagtcgcagaagcggtttccaatgagaaaggccttccgcgc
gagaaaattttcgaagcgctagaaattgcactggctaccgcaacaaagaaaaaatatgaa
ggcgatattgaagttcgcgtagctattgatcgtaaaacaggccattacgacactttccgt
cgttggatggtggttgacgatcaaggtgaagctctggaaaacccatacagcgaaattacg
tttgaagccgctcgttatgaagaaccagagattcaagtgggtgagtttattgaagatcaa
atcgactcagttgcatttgaccgtatcaccacgcaaaccgctaaacaagttatcgtacag
aaagtacgtgaagctgaacgtgcacaaattgttgaacaatttattgaacgtgaaggtgag
attgttactggtgttgttaagaaaagcacccgtgaaagcgtagttgttgatttaggtaac
aatgctgatggcgtgttatttaaagaagacttaatcagccgtgaatctttccgtcctggt
gaccgtgtgcgtgcattattgtactcagtacgtccagaggcgcgtggcgctcagttattt
ttaacgcgcagtaaagctgaaatgttgattgaactgtttcgggttgaagtgccagaaatt
tacgacgaattgattgaagtaatgggtgccgctcgtgatccaggtgctcgcgctaaaatt
gccgtgaaatcaaatgatcgtcgcattgaccctattggtgcatgtgttggtatgcgtggc
gcacgtgtacaagccgtatcaaacgaattaggtggcgagcgcgtagatatcgtgttgtgg
gatgataatcctgcacaatatgtgatcaatgccatggcgccagctgatgttgcatctatc
attgtggatgaagacaaccactcgatggatattgctgtagaagctgacagtttggcacag
gctattggtcgtaatggccaaaacgtacgtttagcgactcaactcactggttgggaacta
aacgtaatgacagttgaagacatgaacaaaaaacaccaagctgaaagtgcaaaagtgatt
gatttgtttgtggcttatctagatgtagataaagattttgcagccgtattggctgatgag
ggattcacttcgctagaagagattgcttatgtcccagaatctgaactattagcagtagaa
ggtttcgacgaaggaatcgttgaagcattacgtgaacgtgcaaaggcggcaatctctaca
agagcattagcgtcggaagaagcgttagatggtgcagagccaagtgatgatttactagca
ttggaaggattagaaagacatttagcttatgttcttgcgagcaaaggcgtagtgacttta
gaagacttggccgagcaaggtattgacgatttaattgatattgaagaattaacagaagaa
aaagcaggcgagctcatcatggctgcccgcaatatctgttggtttggcgaagaagcataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (13)   

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