KEGG   Syntrophobacter fumaroxidans: Sfum_2643
Entry
Sfum_2643         CDS       T00418                                 
Name
(GenBank) DEAD/DEAH box helicase domain protein
  KO
K03732  ATP-dependent RNA helicase RhlB [EC:5.6.2.7]
Organism
sfu  Syntrophobacter fumaroxidans
Pathway
sfu03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sfu00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Sfum_2643
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sfu03019]
    Sfum_2643
Enzymes [BR:sfu01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     Sfum_2643
Messenger RNA biogenesis [BR:sfu03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     Sfum_2643
SSDB
Motif
Pfam: DEAD Helicase_C ResIII UTP25
Other DBs
NCBI-ProteinID: ABK18321
UniProt: A0LLL9
Position
3269361..3270962
AA seq 533 aa
MAYTLVTNLFGCTRRLRSKEERKEREETAPTVSEPEPAASSDTAATAPVADDTAPGERPK
KRRPRRRQGRRSGRKPLPETPLEAGPVETPEESREPEAAEPWDIDQFQVDPEEGKTRFHD
LDLPAPILRGIADAEFRYCTPIQAALLPHTLNGLDAAGRAQTGTGKTAVFIITMLTQFLR
NPAPEGRRKGTPRALVLAPTRELALQIEKETHLLSRHTPFKSVAIFGGMDYEKQKRRLTG
EVIDIVVATPGRLLDFKRQGDLHLSKVEILVIDEADRMLDMGFIPDVQRIIHYTPPKAQR
QTMLFSATLTAEVTRFASQWTRNPVTVEIEPEQVAVDTVNQRVLITTIDEKFTLLFNMIT
RQNLDRVIVFTNRRDQARRLTERLGSYGISCALLSGEVDQKKRVKTLEEFRNGKIRVLVA
TDVAARGLHVEAVSHVFNYNMPMDPEDYVHRIGRTGRAGTSGISVSFASEDDSFLIPALE
KYLGHEIHCEHPDEDMLETLPEPTHTPVAAERPRRSGPYRGRNPRSTGRRKTG
NT seq 1602 nt   +upstreamnt  +downstreamnt
ttggcatacaccctggttacgaatctcttcggttgcacccgcaggctgcggagcaaggaa
gaacgcaaagaacgcgaggaaaccgcgccgaccgtgtcggagcctgaaccggccgcctca
tccgacactgcggcaaccgcaccggtcgccgacgacaccgcacccggtgagcgcccgaag
aagcggcgcccgcgccggaggcaaggccgccgctccgggagaaaaccccttcccgaaacg
ccactggaagcaggccctgttgaaactcctgaagaaagccgcgaaccggaggcggccgag
ccctgggacatcgatcaatttcaggtggatcccgaggaagggaagacccgctttcacgac
ctcgatctgcccgcgccgatcctgcgcggcatcgccgacgccgagttccgttactgcacg
cccatccaggcggccctgctgccgcacaccctcaacgggctggatgcggcaggccgcgct
cagacgggcaccgggaaaaccgcggtcttcatcatcaccatgctcacccaattcctgcgc
aacccggcgcccgaaggccgtcggaaaggaactccccgcgcccttgtcctggcgccgacg
cgagagcttgccctgcagatcgagaaggaaacgcaccttctgtcccgccacacgccgttc
aagagcgtggctatattcggcggcatggattacgagaagcaaaagcgccgcctcaccggt
gaggtcatcgatattgtggtggctacccccggacggttgctggatttcaaacggcagggc
gatcttcatctcagtaaggtggaaatcctggtgatcgatgaggccgaccggatgctcgac
atgggtttcatcccggatgtccagcggatcattcactacacgccgcccaaggcgcaacgt
cagactatgctgttcagcgccacgctgaccgccgaggtcacccggttcgcctcccagtgg
acccggaaccccgtgacggtcgagatcgagcccgagcaagtcgcagtggacacggtcaac
cagcgcgtgctcatcaccactatcgatgagaaattcaccctgctcttcaatatgatcacg
cgacagaatctcgacagggtcatcgttttcaccaaccgtcgcgaccaggccaggaggctg
acggaacgcctggggagctacggcatcagctgcgccctgctctcgggggaagtggaccag
aaaaagcgggtcaagaccctggaggaattccggaacggaaagatccgggtgctcgtggcg
accgacgtggccgcccgggggctccacgtggaagccgtgagccacgtgttcaactacaac
atgcccatggatcccgaggactacgtgcacaggatcggtcgaaccgggcgcgcgggaaca
agcggtatatccgtgagcttcgccagcgaggacgactcttttctgatcccggccctggag
aagtacctcggacacgaaatccactgcgaacacccggacgaggacatgctggagactctg
cccgaaccgacgcacacccccgttgccgcggagcgccccaggcggtccgggccttaccgg
ggcaggaaccccagaagcaccggccggagaaaaaccggctga

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (18)   
   KEGG ORTHOLOGY (1)   
   RefGene (15)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (28)   

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