KEGG   Serratia fonticola DSM 4576: WN53_19325
Entry
WN53_19325        CDS       T04030                                 
Name
(GenBank) transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
sfw  Serratia fonticola DSM 4576
Pathway
sfw03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:sfw00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    WN53_19325
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:sfw03400]
    WN53_19325
Enzymes [BR:sfw01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     WN53_19325
DNA repair and recombination proteins [BR:sfw03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      WN53_19325
SSDB
Motif
Pfam: DEAD TRCF UvrB_inter MFD_D3 Helicase_C CarD_TRCF_RID ResIII UB2H ERCC3_RAD25_C RecG_dom3_C
Other DBs
NCBI-ProteinID: AKG71100
UniProt: A0A0F7D2P6
Position
complement(4355363..4358839)
AA seq 1158 aa
MSISDKSRSSASSYRYSLPDRAGDLRQLGQLTGSACAVECAEIAERHPGPVMLIAPDMQN
ALRLRDEIQQFTDQMVTTLSDWETLPYDSFSPHQEIISARLSSLYHLPTMARGIIILPVN
TLMQRVCPHEFLHGHALVMKKGQRLSRDLLRSQLEQAGYRSVDQVMEHGEFATRGALLDL
YPMGSEEPYRIDFFDDEIDSLRTFDVDNQRTLSEVEAINLLPAHEFPTDKAAIELFRSQW
REQFEVRRDAEHIYQQVSKGTWPAGIEYWQPLFFSQPLPSLFSYLPANTLLVNTGNLEGA
AERFWLDVNQRYENRRIDPMRPLLAPDTLWLRVDALFAELKAWPRMALKTEELPAKAGCT
NLGYQTLPDLTVQAQQKAPLDNLRRFIESFTGGVVFSVESEGRRETLQDLLGRIKLSTSL
IHHLDEVEASGRYMMVGASERGFLDTLRDRALICESDLLGERVSRRRQDNRRTINTDTLI
RNLAELHPGQPVVHLEHGVGRYVGLTTLEAGGIKAEYLILSYAGEDKLYVPVSSLHLISR
YAGGADENAPLHRLGGDVWSRARQKAAERVRDVAAELLDIYAQRAAKSGFAFKHNREQYQ
LFCQTFPFETTPDQEQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENGKQ
VAVLVPTTLLAQQHFDNFRDRFATWPIRIEMMSRFRSAKEQQQILEEAAEGKVDILIGTH
KLLQSDLRWKDLGLLVVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMR
DLSIIATPPARRLAVKTFVREYDSLVVREAILREVLRGGQVYYLYNDVENIDKAAERLAE
LVPEARIAIGHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPSANTIIIERADRF
GLAQLHQLRGRVGRSHHQAYAYLLTPNPKVMSTDAHKRLEAIASLEDLGAGFALATHDLE
IRGAGELLGEDQSGQMTTVGFSLYMELLESAVDALKNGREPSLEDLTSNQTEVELRMPAL
LPDDFIPDVNTRLSFYKRIASAKNEGELEELKVELIDRFGLLPDAARNLLQSAAMRQQAQ
ILGIKRIEGNERGGFIEFGEKNRVDPGYLIGLLQSKPQVYRLDGPTKLKFMLDLTDRVER
LKFIGELLAAFREHTLAV
NT seq 3477 nt   +upstreamnt  +downstreamnt
atgagcatttctgataaaagccgcagctccgcatcctcctaccgttactctcttcctgac
cgcgcgggcgatttacgccagctagggcagctcaccggttctgcctgtgccgttgaatgc
gccgaaatcgccgaacgccatcccggcccggtgatgctcatcgccccggatatgcagaat
gcattgcggttgcgtgacgaaatccagcagtttaccgatcagatggtgaccaccctttcc
gactgggaaacgctgccatacgacagcttctcgccccaccaggaaatcatctcggcgcgg
ctttccagcctgtatcatctgccgaccatggcacgcggcatcatcattctgccggtgaat
acgctgatgcaacgcgtctgcccgcatgagttcctgcatggccatgcgttggtgatgaaa
aagggccaacgactatcgcgggatctgctacggtcacagttggaacaggccggttaccgc
agcgtcgatcaggtgatggaacatggcgaatttgctacgcgcggtgcgctgctggatctg
tatcctatgggcagcgaagagccttatcgcatcgactttttcgacgacgagatcgacagc
ctgcgcacctttgatgtggataaccagcgcacgttgagtgaagtggaagccatcaacctg
ctgccagcgcacgagttcccgaccgataaggccgccatcgagctgttccgcagccagtgg
cgtgaacagtttgaagtgcgtcgcgacgccgaacatatttatcagcaagtgagtaaaggc
acctggcctgccggtatcgaatactggcaaccgctgttcttcagccagcctctgccctcg
cttttcagctatctgccagccaatacgctgctcgtcaacactggcaacctggaaggcgcc
gccgaacgtttctggctggatgtcaatcaacgctatgagaaccggcggatcgatccgatg
cggccgctgctggccccggataccctatggctgcgggtcgatgcgctatttgccgagctg
aaagcctggccgcggatggcgttgaaaaccgaggagctgcctgccaaagcgggttgcacc
aacctgggctaccaaaccctgccggatctcaccgtccaggcccagcaaaaggccccactg
gataatctgcggcgctttattgaaagcttcaccggtggcgtggtcttctcggtagagagt
gaaggccgccgcgaaaccctgcaagatctgcttggccgcatcaagctgagtaccagcctg
atccatcatctggatgaggtcgaagcatcgggccgttacatgatggtcggtgcctccgag
cgtggcttcctggatacgctgcgtgaccgggcgttgatctgtgaaagcgatctgctcggt
gaacgcgtcagccgccgtcggcaggataatcgccgcaccatcaataccgataccctgatc
cgcaacctggcagagctgcacccagggcagccagtggtgcatctggaacacggcgttggc
cgctacgttggcctgacgacgctggaagctgggggcatcaaagcggaatatctgatcctc
tcctatgccggtgaagacaagctgtacgtgccggtctcttccctgcacctgatcagccgc
tatgccggaggagccgacgagaacgccccgctgcaccggcttggcggggatgtctggtcg
cgagccaggcagaaagccgccgaacgcgtgcgtgacgtggccgccgagctgttggacatc
tatgcccaacgtgccgccaagagcggttttgcgttcaaacataatcgtgagcagtatcag
ctgttctgccagaccttcccgtttgagaccacgccagatcaggaacaggccatcaacgcg
gtgctgagcgacatgtgccagccactggcgatggatcgtctggtctgcggcgacgttggc
tttggtaaaaccgaagtcgcgatgcgtgccgccttcctggccgtcgaaaacggtaagcag
gtcgcggtactggtgccgacaaccctgctggcgcagcagcacttcgacaacttccgcgat
cgctttgccacctggcccatccgcatcgaaatgatgtcgcgttttcgcagcgccaaagag
cagcagcagatcctggaagaggcggccgagggcaaagtcgatatcctcattggcacccat
aagctgttgcagagcgatctgcgctggaaagatctggggctgttggtggttgatgaagaa
caccgctttggcgtacgtcacaaagagcgtattaaggcaatgcgtgcagacgtagatatt
ctgacgttaaccgccactccaatcccacgcaccctgaatatggccatgagcggcatgcgc
gatctgtcgatcattgctaccccaccggcccgccgtctggcagtgaaaacctttgtccgc
gagtacgacagcctggtggtgcgcgaggccatcctgcgtgaggtactgcgcggcggccag
gtgtattacctgtataacgacgtcgagaatatcgataaggccgccgaacgcttggcagaa
ctggtgccggaagcaaggattgccattggccacggccagatgcgggaacgcgatctggaa
cgggtgatgaacgatttccaccaccagcgcttcaacgtgctggtctgtaccaccattatt
gaaaccggtatcgatatccccagcgccaataccatcattatcgaacgggcagaccgcttt
ggcctggcgcagctacatcagctgcgtggccgcgtcgggcgttcgcaccatcaggcctat
gcttatctgttaaccccgaacccaaaggtcatgagcaccgacgcgcacaagcggttggaa
gcgattgcctcgctggaagatttgggggccgggttcgcactcgccacccacgatttggaa
atccgtggtgctggggaactgctgggggaagaccaaagcggccagatgaccaccgtgggc
ttctcgctgtatatggagctgttggaaagcgccgtcgacgccctgaagaacgggcgtgag
ccttcgctggaagatctcaccagcaatcagacggaagtggaactgcgcatgccagcgctg
ctgcccgatgactttatcccagacgtgaatacccgtttgtccttctataaacgcattgcc
agcgctaaaaatgagggtgaactggaggaactgaaggttgagctgattgaccgctttggc
ctgctgccggatgcggcgcgtaacctgctgcaaagcgcggcgatgcgtcaacaggcgcag
atattggggatcaagcgaatcgaaggcaacgagcgcgggggctttatcgagtttggcgag
aagaaccgggtcgatccgggttatctgattggcttgctgcaaagcaaaccgcaggtttac
cgcctggatgggccgaccaagctgaagtttatgctggatctcactgacagggtcgaacga
ctgaagtttatcggcgagctgctggcggcgtttcgggaacatactttggcagtttga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (20)   

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