KEGG   Sinocyclocheilus grahami (golden-line barbel): 107602857
Entry
107602857         CDS       T04918                                 
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase
  KO
K12854  pre-mRNA-splicing helicase BRR2 [EC:5.6.2.6]
Organism
sgh  Sinocyclocheilus grahami (golden-line barbel)
Pathway
sgh03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:sgh00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    107602857
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:sgh03041]
    107602857
Enzymes [BR:sgh01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     107602857
Spliceosome [BR:sgh03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    107602857
 Complex C
   U5 SnRNP specific factors
    107602857
SSDB
Motif
Pfam: Sec63 DEAD Helicase_PWI ResIII Helicase_C BRR2_plug AAA_22 AAA_30 T2SSE PhoH SWI2_SNF2 Sigma54_activ_2
Other DBs
NCBI-GeneID: 107602857
NCBI-ProteinID: XP_016150947
UniProt: A0A672SAM6
Position
Unknown
AA seq 2134 aa
MADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLEGTKMGDRSQRTK
PQMLEERRAKRKKRDEDRHDINKMKGFTLLSEGIDEMVGIVYKPKTKETRETYEILLSFI
QAALGDQPRDILCGAADEVLAVLKNDKMRDKERRREVEQLLGPADDTRYHVLVNLGKKIS
DYGGDKELQNMDDNIDETYGVNVQFESDEEEGDEDQYGEVRDEGSDDSEGEEADESSTLT
ANLGNTGDVMMTKKKDLHPRDIDAFWLQRQLSRFYNDAIVSQKKADEVLEILKTASDDRE
CENQLVLLLGFNTFDFIKVLRQHRRMILYCTMLASAQSEAEKEKIMNKMEADQDLSKVLY
QLQETEKEDIIREERSRRERVRKSRVDDLESMDIDHGEAVTSRQLLDLEDLAFSQGSHFM
ANKRCQLPDGSFRKQRKGYEEVHVPGLKPKTFGDDETLVAIEKLPKYAQAGFEGLKTLNR
IQSKLFKTTLETDENLLVCAPTGAGKTNVALMAMLREIGKHINMDGTINVDDFKIIYIAP
MRSLVQEMVGSFGKRLASYGITVSELTGDHQLCKEEINATQIIVCTPEKWDIITRKGGER
TYTQLVRLIIIDEIHLLHDDRGPVLESLIARTIRNVELTQEDVRLIGLSATLPNYEDVAT
CLRVDPSKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVLV
FVHSRKETGKTGRAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFA
IHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTE
LGALDILQMLGRAGRPQYDSKGEGILITSHGELQYYLSLLNQQLPIESQMVAKLPDMLNA
EIVLGNVQNAKDAVNWLGYTYLYVRLLRNPTLYGVSHDDRSSDPLLERRRMDLVHTAATV
LEKNNLVKYDKRSGSFQVTDLGRIASHFYITHESIMTYNQLLKPTLSEIELFRVFSLSSE
FRNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAYISQLKLEGFALMADMVY
VTQSAGRLMRAIFEIVLSRGWAQLTDKTLNLCKMIDKRMWQSMSPLRQFRKLPEEVIKKI
EKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHQFPKLDLAVHLQPITRSTLKVELT
ITPDFQWDDKIHCSSEAFWILVEDVDSEVVLHHEFFLLKAKYAQDEHLVTFFVPVFEPLP
PQYFIRIASDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNAAFENLYQN
FPFFNPIQTQVFNAVYNSDDNVFVGAPTGSGKTICAEFAILRMLLHNSEGRCVYITPIEA
LAEQVFIDWHQKFQETLNKKVVLLTGETSTDLKLLGKGDIIVSTPDKWDILSRRWKQRKN
VQNISLFIVDEIHLIGGDNGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVAHWL
GCSTTATFNFHPNVRPVPLELHIQGFNVSHTQTRLLSMAKPVYHTIMKHSPSKPVLVFVP
SRRQTRLTAIDILTFCAADVVPQRFLHSTEKDLAPFMENLSDVTLKETLSNGVGYLHEGL
SPTERRIVEHLFTSGAIQVMVASRSLCWGTNISAHLVIVMDTQYYNGKIHAYVDYPIYDV
LQMVGKANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCLHDHFNAEIVTKT
VENKQDAVDYMTWTFLYRRMTQNPNYYNLQGMSHRHLSDHLSELVENTLQDLEQSKCISI
EDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYKNIPIRHHE
DTLLRQLAQKVPHKLNNPKFNDPHLKTNLLLQAHLSRMQLSAELQSDTEEILSKAVRLIQ
ACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCTDKGVESIFD
IMEMEDEDRTGLLQLTDVHMADVARFCNRYPNIELSYEVADKDCIKSGNPVLIQVQLERE
EEVTGPVIAPLFPQKREEGWWVVIGDPKSNSLISIKRLTLQQKAKVKLDFVAPVVGVHNY
TLYFMSDSYMGCDQEYKFSMDVKEADSEGESDSD
NT seq 6405 nt   +upstreamnt  +downstreamnt
atggcggatgttactgcacgtagtttgcagtatgaatacaaagcgaactccaacttggtg
ttgcaagcggacagatctctgatcgaccgcacccgcagagatgagcccaccggagaggtg
ctgtctctggtcggcaaactggagggaactaaaatgggagacaggagtcagagaaccaaa
cctcagatgctggaagagaggagagcaaagagaaaaaagagagacgaagacagacacgac
ataaacaagatgaagggcttcacactgctgtctgaggggattgatgagatggtgggcatc
gtatacaagcccaagaccaaagagacaagagaaacatatgaaattcttctcagcttcatt
caggcagcccttggagatcagccaagggatatcctttgtggagctgcagacgaggtgttg
gctgtactgaagaatgacaagatgagagacaaagagaggaggagggaggtggagcagttg
ctggggcctgcggacgacacgcgctaccacgtcctggtcaacctgggcaagaagatctct
gactatggtggagacaaagagcttcaaaatatggatgataacattgatgaaacctatgga
gtcaatgttcagtttgagtctgatgaagaggagggtgacgaggaccagtacggagaggtt
cgggatgaaggctctgatgacagcgagggagaggaggcagatgaaagcagcaccctgact
gctaatctgggaaacacaggcgatgtaatgatgaccaaaaagaaggatcttcacccccga
gacattgatgccttctggcttcagcgacagctcagccgcttctacaatgatgccatcgtg
tctcagaagaaagcagatgaggtcttggaaatccttaagactgccagtgatgacagagag
tgtgagaaccagttggtgctgcttttgggcttcaacacatttgacttcattaaggtcctc
cgccagcacaggcgaatgatcctgtactgcaccatgttggccagtgcccaaagtgaggct
gagaaggagaaaatcatgaataaaatggaagctgatcaggatctttccaaagttctttac
cagctacaggagactgagaaagaggacatcatcagggaggagcgatctcgccgggagaga
gtaagaaaatctcgtgtggatgatctggagtctatggacattgatcatggagaggctgtg
acctcgaggcagctactagatctggaagacctggccttctctcagggcagtcacttcatg
gccaacaagcgttgtcagctgcctgacggctccttccgcaaacagaggaagggttacgag
gaggtccatgtacccggtctcaaacccaaaacctttggtgatgatgagacattggtggct
attgagaagctgcccaaatatgcccaagctggattcgaaggattgaaaaccttgaatcgc
atacagagtaaactcttcaaaaccacattggagacagatgaaaacctgctggtttgcgct
ccaacgggtgctggcaaaacgaatgttgctctcatggcaatgctcagagagatcggaaag
catatcaacatggatggcaccatcaatgttgatgattttaaaatcatctacatcgctccc
atgcgctcactagtacaggagatggtgggcagctttggcaagcgcttggctagttatggc
atcactgtttctgagctgaccggagaccatcagctgtgtaaagaggaaataaacgccacc
caaattatcgtgtgcaccccagagaaatgggacatcattacccggaaaggaggagaacgc
acatatacgcagcttgtgcgccttatcattattgatgagatccacttgctgcatgatgac
cgtggccctgttctggagtccttgattgctcgaaccatccgcaatgtggagctgacacag
gaagacgtgaggctcatcggcctcagtgccacactgcccaactatgaggatgtggcaacc
tgccttcgtgtggatccatccaagggactcttctattttgacaacagtttccggcccgtg
cctcttgagcaaacttatgtaggaattacagagaagaaggctatcaagcgcttccagatt
atgaatgagattgtctatgagaagatcatggaacatgctggaaagaatcaggtgttggtg
tttgtgcactcgagaaaggagaccggaaagacagggcgtgcgatcagggacatgtgtttg
gagaaggacacactggggttgttcctgagagagggttcggcctccactgaggtcctgagg
actgaagccgagcagtgcaagaacctggagctgaaggatctattgccatatggttttgct
attcaccatgctggaatgaccagagtggacagaacgttggtagaggatctgtttgctgac
cgtcacattcaggtattggtgtctacagccactctggcctggggtgtgaacttgccagcg
cacactgtcatcatcaaaggcacacaggtgtacagtccagagaaaggcagatggacagag
ctgggagccttggatatcctacagatgctgggtcgtgctggcaggccgcagtatgactct
aagggagagggtattctgatcacttcccatggagagctgcagtattatctgtccctgctc
aatcagcagctgcccatcgagagccagatggtggccaaactacccgacatgctcaatgct
gagatagtgttgggcaatgtgcagaatgccaaggatgctgtaaattggctgggttacaca
tacctttatgttcggttgttgcggaaccccactctatatggcgtctcccatgacgaccgc
agcagtgaccccctgctagagcgacgaaggatggacctagtgcacacagcagccaccgtc
ttggagaagaacaacttggtcaaatatgacaagagatctggcagctttcaggtgacagac
ctgggccgcattgccagtcatttctacatcacccacgagtccataatgacttacaaccag
ctgctgaagcctacactgagtgagatcgagctcttcagggtgttctcgctctcctctgag
ttcagaaacatcaccgtcagagaggaagaaaaactggagcttcagaaactgcttgagaga
gtccctattccagtgaaggaaagcattgaagaacccagtgcaaagattaatgtgctgctg
caggcatatatctctcagctcaaactggagggctttgctctcatggctgacatggtctat
gtgacgcagagtgctggcagacttatgagggccatctttgagattgtcctgagcagaggc
tgggcccaactcaccgacaagactttgaacctttgtaaaatgatcgacaaaaggatgtgg
cagtcgatgtctcccttgcgtcagttccgcaagcttccagaggaggtcatcaaaaagatt
gagaagaagaactttcccttcgagcgcctctatgatctgaaccacaatgaaattggtgag
ttgatccgcatgccaaagatgggaaagaccattcataagtatgtccatcagttcccaaag
ctagacctggcagttcatctgcagcccatcacacgctccactctgaaagtggagctcacc
atcactccagatttccagtgggatgacaagatacactgctcatctgaggcgttctggatc
ttagtagaggatgtggacagtgaggttgttcttcatcatgagttcttcctcctgaaggcc
aagtacgctcaggatgagcatcttgtgactttctttgtgcccgtgtttgagccgctgcca
ccacagtacttcattcgcatagcttcagaccgttggctgtcatgtgagacgcaactgcct
gtttcattccgtcacctgatccttcctgagaaatatcctcctccaactgagctgctggac
ctgcagccattacccgtgtccgctctgagaaacgcagccttcgagaacctctatcaaaac
tttccctttttcaacccaatccagacccaagtgttcaatgcagtgtacaacagcgatgat
aatgtctttgttggcgcccccaccggcagtgggaagaccatatgtgctgagtttgccatt
cttaggatgctcctacacaactcagagggccgctgtgtctacatcacacccatagaggct
ctggctgaacaggtctttattgactggcaccagaagttccaggagactttgaataagaag
gttgtcctgctcactggtgagacgagcactgacctcaagctgttgggtaaaggtgacatc
atcgtcagcaccccagacaagtgggacatcctgtcccgccgctggaaacagaggaagaac
gtgcagaacattagtctcttcattgtagacgagattcatctcattggaggtgacaatgga
cctgtgttggaggtgatttgctccaggatgaggtacatctcctctcagattgagcggccc
atccgtatcgtggccctcagctcctctctgtctaatgctaaagatgtggcccactggctt
ggctgcagcactacagccaccttcaacttccaccccaatgtcaggccggttcctcttgag
cttcacattcagggcttcaacgtgagtcacacacagactcgtctgctgtccatggctaaa
ccagtgtatcacaccataatgaaacattccccatcgaagccagtgctggtttttgtgcca
tcaagacgtcagactcgtctcactgctattgatatcctcaccttctgtgctgcagacgtg
gtcccacaaaggttcctacactcaactgagaaggacctggctccattcatggaaaatctc
tctgatgttacactgaaggagaccctctctaatggggtggggtaccttcacgagggcctt
tcacctacagagcgcaggattgtggagcatctctttacctctggtgccattcaggtgatg
gtggcatctcgctctctctgctggggtaccaatatttctgcccacctggtgattgtcatg
gacacgcagtactacaatgggaaaatccatgcatatgtggactacccaatctatgatgtg
ctccagatggttggaaaggctaaccgtcctctccaggatgacgagggtcgctgtgtcatc
atgtgtcaagggtctaaaaaggacttctttaagaagttcctctacgagcctctgcctgtg
gagtctcacctggaccactgtcttcacgaccatttcaatgctgagatcgtcaccaagact
gtggagaacaagcaggatgctgtagactacatgacatggacgttcctgtatcgccgcatg
acccaaaaccccaactactacaacctgcagggtatgtctcatcgccacctgtcagatcat
ctgtctgagctggtggaaaacaccttgcaagatctggagcagtccaagtgcatcagcatc
gaggatgaaatggatgtggcacctctgaatctgggcatgatcgcagcctattactacatt
aactacaccaccattgagctgtttagtatgtccctgaatgccaagacgaaggtccgtggc
ctcatcgaaatcatctccaatgctgcggagtataaaaacattcccatcaggcaccatgaa
gacaccctgctgcggcagctggctcagaaagttcctcacaaactgaacaaccccaagttc
aacgacccacatttgaagaccaacctgctgctccaggctcatctgtcccgcatgcaactg
agcgctgagctccagtcagatactgaggagatcctcagcaaggcagtgcggctgatccag
gcgtgtgtagatgtgctctccagtaacggctggttgagtccggcgctggctgctatggag
ctggctcagatggtcacacaagccatgtggtccaaagactcgtacctcaaacagctaccc
cacttcacttctgaacacatcaagcgctgcacggacaagggtgtggagagcatcttcgac
atcatggagatggaagacgaggaccgcactggtcttctgcagcttacagatgtccatatg
gcagatgtggcacgattctgtaaccgctatcccaacattgagctgtcgtatgaagtggct
gacaaagactgcatcaaaagtggaaatccagtgctcattcaagtgcagttggagcgagaa
gaggaagttacaggtccagtcattgcccctctgttccctcagaaacgtgaagaaggctgg
tgggttgttattggagaccccaaatcgaacagtctcatctcaatcaagagactaactctt
caacagaaggccaaggtgaaacttgactttgtggcacctgttgttggtgtgcacaactac
acactgtacttcatgagcgattcctacatgggctgcgaccaggaatacaagttcagcatg
gatgttaaagaagcagacagtgagggagaaagtgacagtgattaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (12)   
   Pfam (12)   
All databases (24)   

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