KEGG   Syntrophobotulus glycolicus: Sgly_0199
Entry
Sgly_0199         CDS       T01429                                 
Name
(GenBank) transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
sgy  Syntrophobotulus glycolicus
Pathway
sgy03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:sgy00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    Sgly_0199
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:sgy03400]
    Sgly_0199
Enzymes [BR:sgy01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     Sgly_0199
DNA repair and recombination proteins [BR:sgy03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      Sgly_0199
SSDB
Motif
Pfam: DEAD UvrB_inter TRCF Helicase_C CarD_TRCF_RID ResIII Helicase_C_2 DUF3638
Other DBs
NCBI-ProteinID: ADY54570
UniProt: F0SW84
Position
208515..212063
AA seq 1182 aa
MPTIDDYLTKGLELDQIQAAIEKRDSPQMIFHISGSMKTALAANLIKKKGQSLILTFSDE
QALKWINDLQTWLPQRRILFYPTTEWLPFEVLGRSRETTAERIRVLRALSEGGNEIIVAP
VQAIVRKLFCPEHWKKYSLQVAVGKTYPLDELIKTLVTVGYDRQEIVEARGQFALRGGIL
DIAPLDCEPVRIEFFDEEVDSIRTFDLETQKSSDARTEAWIFPVQEYVIKIEEQQELKWE
IKNKARKAVGRLLRLGKTEAVKRLHHKVEYLGERLDQGIMDENSYPFLSLLPIKFVSLLG
WLNEQALIFLDEPLRLKEQLDFQHSQRMEEYTANLEKGEEFVDPDRLFLHFETIVSSEQE
KTVVGMANLFREVPGLFPRRVHHINARPIAGYHKTSMLVEEIKKMAATGNTVALFAGNQD
QAGRLSQGLKDSGMENQIRGMEDEVATRGISIFPWALDQGFELPAGKLAIFTESEIYRKE
KRRQVKAQRQNKDEMLLFADLKPGDFVVHLYHGIGKFIGIEKIGVDGIEKDYFAIKYAGE
DKLYVPLDQIQLLQKYLGADADRAPKLNKLNGNEWNKAKSRVRSAVKEMAIDLIELYAKR
ESSKGYVFSADNHWQKEFEDKFPYEETADQLQSIQEIKKDMMKSKVMDRLLCGDVGYGKT
EVAMRAAFKAVADGKQVAILVPTTILAQQHYTTFQERFMDYPVKIEMISRFRTAKEQKQI
IRGLKDGTIDIIIGTHKLVSEGIDFKDLGLLVVDEEQRFGVTHKEKIKALKTNVDVLTLS
ATPIPRTLQMSLVGLRDMSVISTPPDDRYPVQTFVAEFNPDMVRDAVRREIHRGGQVFYV
HNRIESLDRVLRMLKSLVPEAKCGVVHGQMNETQLENEMISFLEKEKDILICTTIIETGL
DMANVNTLIVDEADRFGLSQLYQLRGRVGRSNRKAYAYFLYQPSKILTEEAEKRLSTIRE
FTEFGSGFKVAMRDLEIRGAGSLIGGEQHGHLAAVGFNLYVRMLKEAIQELRGEETEEQM
EPSIDIQIKALLPDEYIIDKQAKATLYQRMIGISGEEEMSEMLDELVDRFGTPPQEVENL
MEIIRIRYRAKTLKIDQIVQSRQEITLRFAQDPGLAGEQLMELASNYPYPLAFAFTEGQL
EFKIRLRTVFQDDVPKVILKLFDRLEQAKKEIGKSSELLNQI
NT seq 3549 nt   +upstreamnt  +downstreamnt
atgccgactattgatgactatttaaccaaaggactggaattggatcaaattcaagcagct
attgaaaaaagggattctcctcaaatgatttttcatatttccggaagtatgaagactgct
ttggcggcaaatttaatcaaaaagaagggccagagtttgattcttacgttttcagatgag
caggcattgaaatggatcaatgatctgcagacctggcttccccaaaggcggattttattc
tatcccacgacagagtggcttccttttgaagtgcttggacggagcagggaaactacggca
gagagaatcagagtcctgcgggctctttcggagggaggaaatgagatcattgtcgctccc
gttcaagcaatagtccggaagcttttttgtccggaacattggaaaaagtatagtttgcag
gtcgctgtcggaaagacgtatcctctcgatgaattgatcaagactttggtcaccgtgggg
tatgaccggcaggaaatcgtggaggcccggggtcaattcgctttaaggggggggatattg
gatattgctcctttggattgtgaaccggtaagaatagaattttttgatgaagaggttgac
tcgatcaggacctttgatctggaaacgcaaaaatcatctgatgcgcgaaccgaagcatgg
atttttcccgtacaggaatatgtgattaaaatagaggagcagcaggaactgaagtgggaa
atcaaaaacaaggcccgcaaggccgtcggtcggctgctgaggctgggaaaaactgaagcg
gtcaagcgattgcatcataaagttgaatatttgggggagagactggaccaggggataatg
gacgaaaacagttatccttttctgagtttgcttcccataaagtttgtttctttgcttggt
tggctaaatgaacaggccttgatttttcttgatgagcccttgcgcttaaaggaacaatta
gattttcaacattcacaaaggatggaggaatataccgccaatttggaaaaaggtgaagaa
ttcgttgatccggacagactttttcttcattttgaaacgatcgtcagcagcgagcaagaa
aaaacggtggtgggaatggcaaatttatttcgggaagtccccggtctttttcctcgccgg
gtacatcatatcaatgcccgcccgattgcagggtatcataagacttcgatgctggtcgaa
gagatcaagaaaatggcagcgaccggaaataccgtcgccttatttgcggggaatcaagac
caggccggcagattaagccagggattaaaagacagtgggatggaaaatcagatccgggga
atggaagatgaggtcgccactaggggaatcagtatttttccctgggccttagatcagggc
tttgagctcccggcaggcaagcttgcgatttttacggagagtgaaatttatcgcaaggaa
aaacgtcgtcaggttaaggctcagcggcaaaataaggacgaaatgctgctttttgcggac
cttaaacccggcgatttcgttgttcacctttatcacggaatcggaaaatttattgggatt
gagaaaatcggggtcgatgggatagaaaaggactattttgccataaaatacgcgggagaa
gacaagctttatgttcctttagatcagatccagcttttgcaaaaatatcttggagcagat
gcagacagggcaccgaagctgaacaagcttaacgggaatgagtggaataaggcaaaaagt
cgtgtccgaagcgctgtcaaggaaatggcgattgatctaatcgagctttatgccaagagg
gaaagctctaaaggctatgtgttcagtgcggataatcactggcaaaaagaatttgaagat
aaattcccttatgaagaaaccgccgatcaattgcagagtattcaagagataaagaaagat
atgatgaagtctaaagtcatggatcgtcttttatgcggggatgttggttatggaaaaacg
gaagtcgcaatgagagcggcttttaaagcggtcgcggatggaaagcaggtggcaatcctg
gtgcccacaaccattttagctcagcagcactatacaacatttcaagaaagatttatggat
tacccggtaaaaattgagatgatcagccgcttcagaacggcaaaggaacaaaaacagatt
atccggggcctaaaagacgggacaattgatattattatcgggactcataaattggtttct
gaaggaatagattttaaagacttagggctgctggttgtggatgaagaacagcgttttggg
gtaacccataaagaaaaaattaaagcgttaaaaacgaatgtcgatgttttgactctctct
gctacacccattccaagaactttgcagatgtctctggtcggactgagagatatgagcgta
atcagtaccccgccggacgacaggtacccggttcagacttttgtggcggaatttaatccg
gatatggtccgggatgccgttcgcagggagattcacagaggcggacaggtgttttacgtt
cataacaggattgaaagcctggacagagtattaagaatgttaaaatctcttgtgcctgag
gccaagtgtggtgttgtgcatggccagatgaatgaaactcagctggagaacgaaatgatt
tcctttttagaaaaagaaaaagatattctgatctgtaccacaatcattgaaaccgggttg
gatatggcaaatgtaaatactcttattgtggatgaagcggatagatttgggttaagccag
ctttatcagctgagagggcgggtaggccgttctaatcggaaagcttatgcttattttttg
tatcagcctagtaaaatattgaccgaagaggctgaaaaaagattgagtaccatcagggag
tttacagagtttggttccggttttaaagtggctatgcgggacctggagatcaggggagcg
ggcagcttgatcggaggagagcagcatgggcatttggctgcggttggttttaacttatat
gtacggatgctcaaggaggccatccaggagctcagaggggaagaaacagaggaacagatg
gaaccaagtattgatattcaaatcaaagccttgctgcccgacgagtatattatcgataaa
caggctaaggcgactttgtatcaacggatgatcggaatttccggtgaagaagagatgagt
gagatgctggatgaacttgtggacagatttggaacacctccccaggaagttgagaatcta
atggagatcatcagaatccgataccgggcgaaaaccttaaaaattgatcagattgttcaa
agcagacaggaaataacattgcgttttgctcaagatcccgggcttgccggcgagcaatta
atggaactggcgtcaaattatccttatcctttagcttttgcattcactgaaggacaatta
gaatttaaaatcaggttgcgtacagtatttcaagatgatgtgcccaaagtgattcttaaa
ttgtttgaccggctggagcaggccaaaaaggaaataggaaaatcaagtgaattgcttaac
caaatatga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (21)   
   KEGG ORTHOLOGY (1)   
   RefGene (18)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (36)   

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