KEGG   Shewanella putrefaciens 200: Sput200_0069
Entry
Sput200_0069      CDS       T02015                                 
Name
(GenBank) formamidopyrimidine-DNA glycosylase
  KO
K10563  formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
Organism
shp  Shewanella putrefaciens 200
Pathway
shp03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:shp00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    Sput200_0069
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:shp03400]
    Sput200_0069
Enzymes [BR:shp01000]
 3. Hydrolases
  3.2  Glycosylases
   3.2.2  Hydrolysing N-glycosyl compounds
    3.2.2.23  DNA-formamidopyrimidine glycosylase
     Sput200_0069
 4. Lyases
  4.2  Carbon-oxygen lyases
   4.2.99  Other carbon-oxygen lyases
    4.2.99.18  DNA-(apurinic or apyrimidinic site) lyase
     Sput200_0069
DNA repair and recombination proteins [BR:shp03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA glycosylases
     Sput200_0069
SSDB
Motif
Pfam: Fapy_DNA_glyco H2TH zf-FPG_IleRS DUF1631 NFACT_N Ribosomal_S13
Other DBs
NCBI-ProteinID: ADV52559
UniProt: E6XPC5
Position
complement(82597..83412)
AA seq 271 aa
MPELPEVEVTRQGIAPFLIEQTVSDLVIRNGSLRWPVPDIAKHIIGQTIRQVRRRAKYLL
IDTDAGTTIVHLGMSGSLRILPHNTPVEKHDHIDLVLANGRILRFNDPRRFGAWLWCELP
EEAHPLLAKLGPEPLTNAFNVNQLATALAGKKKAIKLCLMDNHIVVGVGNIYANEALFAA
GIHPEAEAGKIDNERLSLLVAEVKQILAHAIKQGGTTLKDFTNAEGKPGYFAQKLHVYGR
GGETCTNCGNLLSEIRLGQRTTVFCSICQTR
NT seq 816 nt   +upstreamnt  +downstreamnt
atgccagaattaccagaagttgaagtcacccgtcagggtattgccccctttctcattgag
caaactgtctcggatcttgtgatacgtaatggctcactacgttggccagtacctgatatc
gctaaacacattattggccaaaccatacgccaagtgcgccgacgtgctaaatatctgtta
atcgatacagatgcaggcacgactatcgtccatttaggtatgtcgggaagtttgcggatc
ttgccgcacaacactcccgttgaaaaacatgaccatatcgacttagtgctcgccaatggg
cgtatattacgctttaacgaccctagacgttttggtgcttggctttggtgcgaactccct
gaagaagcccatccattactcgccaaacttgggccagaacctttaaccaatgcctttaat
gttaatcaattagccaccgcattagcgggaaaaaagaaggcaattaaactctgtttaatg
gataaccatattgtcgtcggtgtggggaatatttacgctaacgaggcgctatttgcagca
ggtattcacccagaagccgaagcgggaaaaatcgataatgaacgcttaagcctattagtt
gctgaggtgaagcaaatcttagctcacgcgataaagcagggaggaaccacactgaaagac
ttcaccaatgctgagggtaaaccgggatattttgctcaaaaactccatgtttatggtcga
ggcggcgaaacctgcacaaactgtggaaacctactcagtgaaatccgtttaggccaacgt
accaccgttttttgtagtatttgccaaactcgttga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (2)   
   KEGG ENZYME (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (17)   

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