KEGG   Shewanella sp. W3-18-1: Sputw3181_3519
Entry
Sputw3181_3519    CDS       T00453                                 
Name
(GenBank) ATP-dependent helicase HrpB
  KO
K03579  ATP-dependent RNA helicase HrpB [EC:5.6.2.6]
Organism
shw  Shewanella sp. W3-18-1
Brite
KEGG Orthology (KO) [BR:shw00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:shw03019]
    Sputw3181_3519
Enzymes [BR:shw01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     Sputw3181_3519
Messenger RNA biogenesis [BR:shw03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Others
     Sputw3181_3519
SSDB
Motif
Pfam: HrpB_C Helicase_C DEAD ResIII AAA_30
Other DBs
NCBI-ProteinID: ABM26331
UniProt: A0A6N3J8M8
Position
complement(4012920..4015460)
AA seq 846 aa
MNFDIRSLNSLPIYSLLAPLREAFSTHAQVILEAPTGAGKSTALPLAMLDWPEVTGRILM
LEPRRVAARSVAHYIARCRQQNVGQEIGYRVRGESKVSANTRLEIVTEGILTRMIQQDPE
LKGIEVIIFDEIHERHLTTDLGLALALEVQASLRDDLKILAMSATLSGLALGELMPSAAI
LHSEGRSFPVEVEYCPVPSQQHWLEHLGRCIVELVSANTVTEKNTVHNDVLVFLPGKAEI
LRLVQYLGERLDSDTFLICPLYGELSGAEQDRAIAVSTQGKRKIVLATNVAESSLTIDNI
GFVIDSGYKRQASFNPKTGVTRLSLKRISQASATQRAGRAGRLAAGRCIRLWSQEEQGRM
LKADEPEICQADLVSMAHDCAYWGAKSFSDLMLLTSPPKVNEALAWRLLQHLGMVDPQNK
LTPHGKAAYELGCHPRLAHMLLSAKTLAEQLSQPELSSLACLLAGILEARGLPKKGADMM
NYLYFATQGQVGQQVKQWQRKLAVSGDLSVIASHAHHKDVGLLLAFAYPDRIARARGVEG
YQLANGTGVVLAAEDGLAQTPWLVVADLQETEGKSAGRIYLASQLHPNLFDEALKPLLNI
TEQCGWDEIKGRVVAERQYKIGQILFRSESISKPERPQIVAALLNYIRLQGLKILNWNDN
LEQLQYRLQLAKALDASTDWPDISDTALLANLETWLAPYLENVNNLPQLQKLDCFSFVAN
QLSWQQQQMLETCLPTSWALVTGTHAPIVYDASGRALLRVRLQETFGMAQSPILAQGKLK
VTMELLSPAQRPLALTADLASFWQGPYVEVKKEMRGRYPKHLWPDDPVNTLPTKYTKKKT
LGLSQS
NT seq 2541 nt   +upstreamnt  +downstreamnt
ttgaactttgatatcagatccttgaactctctacccatttattctctacttgctccgctg
cgtgaggcattttctacccatgcccaagtcatccttgaggcgcctactggggcgggtaaa
tctaccgctttgcctctggctatgttggattggcctgaagtcactgggcgtattctgatg
cttgagcctcgtcgagtcgccgcccgtagtgtggcacattatattgcccgctgccgacaa
cagaacgtagggcaagagattgggtatcgggtgcgtggagagtctaaggtcagcgccaat
acacgcttagagatagttaccgaagggattttaacgcggatgatccagcaagatcctgaa
ttaaaagggattgaagtgatcatttttgatgagatccacgagcggcatcttacaacggat
cttggccttgccttagcgctcgaagtacaagcttccctgcgtgatgatttaaaaatattg
gctatgtcggcgacgttatcgggcttagccttgggtgaattaatgccctcggcggcgatt
ttacacagcgaaggtcgcagtttccccgttgaagttgaatattgccccgtgccaagtcag
cagcattggttggagcatcttggtcgctgtattgtcgagcttgtcagtgcaaatacggtt
actgaaaaaaataccgttcacaatgatgtattagtctttttacccggcaaagctgaaatc
ctgcgattagtgcagtatttgggtgagcgtctcgacagtgatactttcttgatatgtcca
ttatacggtgagctttctggtgctgagcaagatcgcgccatagcggtatcgacacaggga
aagcgtaaaattgtattggcaaccaacgtggcagaatcgagcttaacaattgataatatt
ggttttgttatcgacagtggctataaacgtcaagccagttttaatcctaaaactggcgtt
actcgcctcagtttaaaacgtattagtcaagcctcggcaactcaacgtgcagggcgtgcg
gggcgtttagcggcaggtcgatgtattcgattatggagtcaagaagaacaagggcgaatg
ctaaaggctgatgagcctgaaatttgccaagcggatcttgtctcaatggcccacgattgt
gcctattggggagcaaaatcctttagtgatctaatgttactgacttcaccccccaaggta
aatgaagcactagcttggcggctgttacagcatttagggatggttgatccccaaaataag
ttaactccccatggcaaagctgcctatgagttaggttgccaccctcggcttgcccatatg
ttactgagtgctaaaaccttagctgagcagttatctcaaccagaattatctagcttagcc
tgtttgcttgcggggattttagaggccagaggcttacccaaaaagggtgcagatatgatg
aattacctgtactttgcgactcagggacaagtggggcagcaggtaaaacaatggcaaaga
aagttagccgtgtctggtgatttaagcgtgatagcctcccatgctcatcataaagatgtc
gggttattattggcatttgcctatcctgatcgtatcgctagggcgcggggcgtagaggga
tatcaattggctaatggcacgggtgttgtgctcgccgcggaggatggacttgcgcaaaca
ccatggcttgttgtcgctgatcttcaagaaacagaaggtaaaagtgcaggtcggatctat
ttggcaagtcagttgcaccccaatctattcgatgaggcactaaagcccctgctaaatatc
acagagcaatgcggttgggatgagataaaagggcgagtagtggcagaacgccaatataag
attggccaaatattgttcaggtctgaatcaatatctaagcctgaacgcccacaaatagtg
gccgcattactgaactatatccgtttgcagggattaaaaattctcaattggaacgacaac
ttagaacaactccaatatcgactccagttggctaaagcactggatgcgagtactgattgg
cctgatatcagtgacactgcattattggcaaaccttgaaacttggctggcgccttacctt
gaaaatgtgaataatctgccgcagttacagaaactcgattgttttagctttgtcgcaaac
caattaagttggcagcagcaacaaatgctcgagacatgtttgccaacctcttgggcgtta
gtcactggaacgcatgccccgatagtgtatgacgcctctgggcgagctttgcttagggta
agattacaagaaacctttggtatggcacaaagcccaatattggcacagggcaaacttaag
gtgacgatggagttgctctcgccagcacagcgaccattagcacttacagccgatttagcc
agcttttggcagggcccttatgttgaagtcaaaaaagaaatgcgtggtcgttatccaaaa
catttgtggccggacgatcctgtgaatactttacctacaaaatataccaagaagaaaacc
ttgggtttatctcagtcatag

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Ontology (2)   
   KEGG BRITE (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (13)   

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