KEGG T02063: SHJG

Streptomyces hygroscopicus subsp. jinggangensis 5008: SHJG_5824

Entry

SHJG_5824         CDS       T02063

Name

(GenBank) DNA-directed RNA polymerase subunit alpha

K03040

DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]

Organism

shy Streptomyces hygroscopicus subsp. jinggangensis 5008

Pathway

shy03020

RNA polymerase

Brite

KEGG Orthology (KO) [BR:shy00001]
09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    SHJG_5824
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:shy03021]
    SHJG_5824
   03400 DNA repair and recombination proteins [BR:shy03400]
    SHJG_5824
Enzymes [BR:shy01000]
2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     SHJG_5824
Transcription machinery [BR:shy03021]
Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     SHJG_5824
DNA repair and recombination proteins [BR:shy03400]
Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      SHJG_5824

SSDB

Motif

Pfam:

RNA_pol_A_bac RNA_pol_A_CTD RNA_pol_L HHH_5

Other DBs

NCBI-ProteinID:

AEY91091

Position

6629353..6630375

AA seq 340 aa
MLIAQRPSLTEEVVDEFRSRFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL
HEFTTVPGVKEDVTDLILNIKQLVVSSEHDEPVVMYLRKQGPGLVTAADIAPPAGVEVHN
PDLVLATLNGKGKLEMELTVERGRGYVSAVQNKQVGQEIGRIPVDSIYSPVLKVTYKVEA
TRVEQRTDFDKLIVDVETKQAMRPRDAMASAGKTLVELFGLARELNIDAEGIDMGPSPTD
AALAADLALPIEELELTVRSYNCLKREGIHSVGELVARSEADLLDIRNFGAKSIDEVKAK
LAGMGLALKDSPPGFDPTAAADAFGADDDADAGFVETEQY

NT seq 1023 nt +upstreamnt +downstreamnt
atgctgatcgctcagcgtccctcgttgaccgaagaggtcgtcgacgagttccgctcccgg
ttcgtgatcgagccgctggagccgggcttcggctacaccctcggcaactccctccgccgt
accctcctgtcctcgatcccgggtgccgccgtcacctcgatccggatcgacggcgtgctg
cacgagttcaccaccgtgccgggcgtcaaggaggacgtcaccgacctgatcctcaacatc
aagcagctggtcgtctcctcggagcacgacgagccggtcgtgatgtacctgcgcaagcag
ggcccgggtctggtcaccgccgccgacatcgcgcccccggccggtgtcgaggtgcacaac
cccgacctggtcctcgccacgctcaacggcaagggcaagctggagatggagctgacggtc
gagcgtggccgcggttacgtctccgccgtgcagaacaagcaggtgggccaggagatcggc
cgtatcccggtcgactcgatctactcgccggttctgaaggtcacgtacaaggtcgaggcc
acgcgtgtcgagcagcgcaccgacttcgacaagctgatcgtcgacgtcgagaccaagcag
gcgatgcgtccgcgtgacgccatggcctccgccggcaagacgctggtcgagctgttcggt
ctcgcgcgcgagctgaacatcgacgccgagggcatcgacatgggtccgtccccgacggac
gccgcgctcgccgccgatctggcgctgccgatcgaggagctggagctcaccgttcggtcg
tacaactgcctcaagcgtgagggcatccactccgtgggtgagctggtcgcgcgctccgag
gccgacctgctggacatccgcaacttcggtgcgaagtccatcgacgaggtcaaggcgaag
ctggccggcatgggcctggccctcaaggacagtccgcccggattcgacccgaccgctgcc
gcggacgcgttcggtgccgatgacgacgcggacgccgggttcgtggagaccgagcagtac
tga

All links

Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (4)   
   Pfam (4)   
All databases (14)   

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