KEGG   Shinella sp. HZN7: shn_07680
Entry
shn_07680         CDS       T04278                                 
Name
(GenBank) ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
  KO
K00525  ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
Organism
shz  Shinella sp. HZN7
Pathway
shz00230  Purine metabolism
shz00240  Pyrimidine metabolism
shz01100  Metabolic pathways
shz01232  Nucleotide metabolism
Module
shz_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP
shz_M00938  Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP
Brite
KEGG Orthology (KO) [BR:shz00001]
 09100 Metabolism
  09104 Nucleotide metabolism
   00230 Purine metabolism
    shn_07680
   00240 Pyrimidine metabolism
    shn_07680
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:shz03400]
    shn_07680
Enzymes [BR:shz01000]
 1. Oxidoreductases
  1.17  Acting on CH or CH2 groups
   1.17.4  With a disulfide as acceptor
    1.17.4.1  ribonucleoside-diphosphate reductase
     shn_07680
DNA repair and recombination proteins [BR:shz03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   Modulation of nucleotide pools
    shn_07680
SSDB
Motif
Pfam: Ribonuc_red_lgC Ribonuc_red_2_N TACO1_YebC_N Ribonuc_red_lgN CPL
Other DBs
NCBI-ProteinID: ANH03938
UniProt: A0A1A9G071
Position
complement(1583771..1587589)
AA seq 1272 aa
MRIERRFTKPGQSAYAEIEFRKAVSEIKNPDGSIVFRLADIDVPAQFSQVAADILAQKYF
RKAGVPARLKKVEENDVPSFLWRSVPDTEALKALPEGERYGSETDARQVFDRLAGTWTYW
GWKGKYFASEEDAAAFKDELAYMLATQRVAPNSPQWFNTGLHWAYGIDGPGQGHFYVDPF
TGKLTKSKSAYEHPQPHACFIQSVEDDLVNENGIMDLWVREARLFKYGSGTGSNFSHLRG
EGERLSGGGRSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDIDHPDIEDYINWKVKE
EQKVAALVTGSKIVAKHLKAIMKACVNCSADNDACFDPAENPALKREIRAAKKDQVPENY
IKRVIQFAKQGYKDIEFKTYDTDWDSEAYLTVSGQNSNNSVSLKDDFLRAVENDGDWHLT
ARKDGKVMKTLKARDLWESISYAAWASADPGLHFNTTMNDWHTCPAAGPIRASNPCSEYM
FLDDTACNLASLNLLQFKDAATKKINIADYEHAVRLWTIVLEISVMMAQFPSRQIAELSY
EYRTLGLGYANIGGLLMSSGIPYDSAEGRAIAGSLTAIMTGVAYATSAEMASELGPFPNF
APNRDNMLRVMRNHRRAAYGETAGYEALSVNPVALVHADCSDEALVAHAVAAWDKAVELG
EKHGYRNAQTTVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPEALR
TLGYSESQIAEIEAYAVGHGNFNQAPAVNPGSLKAKGFPEDKIEAVNAGLKSAFDIKFAF
NQWTLGADFLKDVLKVSDEQLADMSFNLLEHIGFSKKEIEAANIHVCGAMTLEGAPFLKA
EHLPVFDCANPCGKIGKRYLSVESHIRMMAAAQPFISGAISKTINMPNEATVEDCKNAYM
LSWKLALKANALYRDGSKLSQPLNASLIEDAEDEDDAVETLVASPAAAQAVAVTEKIVEK
IIERVVREREKLPNRRQGYTQKAVIGGHKVYLRTGEFGDGRLGEIFIDMHKEGAAFRAMM
NNFAIAISLGLQYGVPLEEYVEAFTFTKFEPAGIVVGNDAIKNATSILDYVFRELAVSYL
GRHDLAHVDTSDFSNTALGKGIQEGKTNLISTGWTRGHKPTLIQGGQGGDRPLAEPKGAA
TAAPAKASSVSNITSFAGSAARKIEPVTAISSSEIVAFKRDYEERAAELAEEIADETAEE
ATESITALFSDKAAAQAASAKADAKKLENERRMRSIAQGYTGNMCSECQNFTMVRNGTCE
KCDTCGSTSGCS
NT seq 3819 nt   +upstreamnt  +downstreamnt
atgcgcatagaacgtcgtttcaccaaacccggccagtcggcctatgcggaaatcgaattc
cgcaaggccgtgagcgagatcaagaacccggacggctccatcgtcttccgccttgcggat
atcgacgtgccggcccagttctcccaggtcgccgccgacatcctcgcgcagaaatatttc
cgcaaggccggcgtgccggcacgcctgaagaaggtcgaggagaacgacgtcccctccttc
ctgtggcgctccgtgccggacaccgaagccctgaaggcgctccccgagggtgagcgctac
ggctcggaaaccgacgcccgccaggtcttcgaccgcctcgccggcacctggacctactgg
ggctggaagggcaagtatttcgcttccgaggaagacgctgccgccttcaaggacgaactc
gcctatatgctcgccacgcagcgcgtcgccccgaactcgccgcagtggttcaacacgggc
ctgcactgggcctacggcatcgacggccccggccagggccatttctatgtcgaccccttc
accggcaagcttaccaagtccaagtccgcctacgagcatccccagccgcacgcctgcttc
atccagtccgtcgaggacgacctcgtcaacgagaacggcatcatggacctgtgggtgcgt
gaagcccgcctcttcaaatacggctccggcaccggctccaacttctcgcacctgcgcggc
gaaggcgaaaggctttcgggcggcggccgttcctccggcctgatgagcttcctgaagatc
ggcgaccgcgcggccggtgccatcaagtcgggcggcacgacgcgccgcgcggccaagatg
gtcgtggtcgacatcgaccatcccgatatcgaggactacatcaactggaaggtcaaggaa
gagcagaaggtggcggccctcgtcaccggctcgaagatcgttgccaagcacctcaaggcc
atcatgaaggcctgcgtgaattgctcggccgacaacgacgcctgcttcgatcccgccgag
aacccggccctcaagcgcgagatccgtgccgccaagaaggaccaggttccggaaaactac
atcaagcgcgtcatccagttcgccaagcagggctacaaggacatcgagttcaagacctac
gacacggactgggattcggaagcctatctcaccgtctccggccagaactcgaacaattcc
gtctcgctgaaggacgacttcctgcgcgccgtcgaaaatgacggcgactggcacctcacc
gcccgcaaggacggcaaggtcatgaagacgctgaaggcgcgggacctgtgggaatcgatc
tcctacgccgcctgggcttcggccgatccgggcctgcacttcaacacgacgatgaacgac
tggcacacctgcccggccgccggcccgatccgcgcgtcgaacccgtgctcggaatatatg
ttcctcgacgacacggcctgcaacctcgcctcgctgaacctcctgcagttcaaggatgcg
gcgacgaagaagatcaacatcgccgactacgaacacgccgtccgtctctggaccatcgtg
ctcgaaatctcggtgatgatggcccagttcccgtcgcgccagatcgccgagctctcctac
gaataccgcacgctcggcctcggctatgccaatatcggcggcctgctgatgtcctcgggc
attccgtatgactcggccgaaggccgcgccatcgcaggtagcctgaccgccatcatgacc
ggtgtcgcctatgcgacctcggccgagatggccagcgaactcggccccttcccgaatttc
gcgccgaaccgcgacaacatgctgcgcgtcatgcgcaaccaccgccgcgccgcctatggc
gagaccgccggctacgaggccctttcggtgaacccggtcgccctcgtccatgccgattgc
tcggatgaggcgcttgtcgcccatgccgtcgccgcctgggacaaggccgtcgaactcggc
gagaagcacggctaccgcaatgcccagacgaccgtgatcgcgccgaccggcacgatcggc
ctcgtcatggactgcgacaccaccggcatcgagcccgacttcgcgctggtgaagttcaag
aagctcgccggcggcggctacttcaagatcatcaaccgcgccgttccggaagccctgcgc
acgctcggctattcggaaagccagatcgccgagatcgaggcctatgccgtcggccatggc
aatttcaaccaggcacccgccgtcaaccccggctcgctgaaggccaagggttttccggaa
gacaagatcgaggccgtcaatgccggcctgaagtccgccttcgacatcaagttcgccttc
aaccagtggacgctcggcgccgacttcctgaaggacgtgctgaaggtctcggacgaacag
ctcgccgacatgtccttcaacctgctggagcatatcggtttctccaagaaggagatcgag
gctgccaatatccatgtctgcggcgcgatgacgctggaaggcgcccccttcctcaaggcg
gaacacctgccggtcttcgattgcgccaatccctgcggcaagatcggcaagcgctacctt
tcggtcgaaagccacatccgcatgatggcggccgcccagccgttcatctcgggcgccatc
tccaagacgatcaacatgccgaacgaggcgaccgtcgaggattgcaagaacgcctacatg
ctctcctggaagctcgcgctgaaggcgaacgccctctaccgcgacggctcgaagctgtcc
cagccgctcaacgcctcgctgatcgaggacgcggaggacgaggacgacgccgtcgagacg
ctggtcgcaagcccggccgccgcccaggccgtggcggtcacggaaaagatcgtcgagaag
atcatcgagcgcgtggtgcgcgagcgtgagaagctgccgaaccgccgccagggctacacc
cagaaggccgtcatcggcgggcacaaggtgtatctgcgcaccggcgaattcggcgacggc
cgcctcggcgagatcttcatcgacatgcacaaggaaggcgccgccttccgcgcgatgatg
aacaacttcgccatcgccatctcgctcggcttgcagtacggcgtgccgctggaggaatat
gtggaggccttcaccttcaccaagttcgagccggccggcatcgtcgtgggcaacgacgcg
atcaagaacgcgacgtcgatcctcgactatgtcttccgcgagcttgccgtctcctatctc
ggccgccacgaccttgcccatgtcgatacgtccgacttctccaacacggcgctcggcaag
ggcatccaggaaggcaagacgaacctgatctcgaccggctggacgcgcggccacaagccg
acgctcatccagggcggccagggcggcgatcgcccgctggcagaacccaagggcgccgcc
accgccgccccggccaaggcctcgtccgtcagcaacatcacctcgttcgccggcagcgcg
gcccgcaagatcgagccggtgacggcgatctcctcctccgagatcgttgccttcaagcgc
gactacgaggagcgcgcggccgaacttgccgaggagatcgcggacgaaacggccgaggaa
gcaaccgagagcatcaccgccctcttctccgacaaggccgccgcccaagccgccagcgcc
aaggccgacgccaagaagctggagaacgagcgccgcatgcgctccatcgcccagggctac
accggcaacatgtgctccgagtgccagaacttcacgatggtgcgcaacggcacctgcgag
aagtgcgacacctgcggctcgacgagcggctgcagctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (6)   
   KEGG PATHWAY (4)   
   KEGG MODULE (2)   
Chemical substance (11)   
   KEGG COMPOUND (11)   
Chemical reaction (5)   
   KEGG ENZYME (1)   
   KEGG REACTION (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (20)   
   KEGG ORTHOLOGY (1)   
   RefGene (17)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (52)   

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