KEGG   Sesamum indicum (sesame): 105162548
Entry
105162548         CDS       T04135                                 
Name
(RefSeq) exosome complex component RRP43 isoform X1
  KO
K12586  exosome complex component RRP43
Organism
sind  Sesamum indicum (sesame)
Pathway
sind03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sind00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    105162548
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sind03019]
    105162548
Messenger RNA biogenesis [BR:sind03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     105162548
SSDB
Motif
Pfam: RNase_PH RNase_PH_C
Other DBs
NCBI-GeneID: 105162548
NCBI-ProteinID: XP_020549352
UniProt: A0A8M8US79
Position
LG5:complement(13114175..13118479)
AA seq 307 aa
MASMGGPNDLSSEMELDAFRRLFPICFHERHLLESIRPDGRALGRARDTTLMLGAVASAN
GSALAKIGCTTMLAAIKLEVMTPTAEAPDEGCIAIDFHMPPICSPLVRPGRPAELAPVIS
KQLSDTILRQGIISGMINLKDLCLVSGKAAWMAYLDIYCLDADGALFDAALLSAVAAFSH
LQIPVVSFNDDGRIVLISDDNSGAMKEKEPVNKEKIKLKLNNLPFSLTCILHKNYILADP
TSEEESIMETFLTVVLDSSFQLVSLNKPGGPGLAHTSSIQECITLTRQRVKEVQKILQEA
ISDMEVD
NT seq 924 nt   +upstreamnt  +downstreamnt
atggcctctatgggtggaccgaatgatttgtcttcagagatggagctggatgcatttaga
cgtctttttcctatatgctttcatgagcgtcaccttcttgaatctataaggcctgatggc
cgagcccttggaagagctagagacacgacgcttatgcttggagctgttgcatctgctaat
gggtcggcgctagctaagataggttgcactacaatgttggctgccattaaactggaagtc
atgactccaactgcagaggcgcctgatgaaggatgcatagccattgatttccacatgcct
ccaatttgttctccactggttcgccctggcaggccagcagaactagcgccagtaatatcg
aagcaattatctgacaccattttgaggcaagggatcatttctggcatgataaatctgaaa
gatttatgtttagtgagcggcaaagctgcttggatggcctacctggacatatactgtttg
gacgctgatggtgccctttttgatgcagcattgctatctgcagtcgcagccttctcacat
ttgcaaattcctgtagtctcattcaatgatgacgggagaatagttcttatatctgacgac
aattctggagcaatgaaggaaaaggaacctgtcaataaagagaagataaagctgaagttg
aataatttaccattctccttaacatgcatacttcacaagaactacattctggcagatccc
acctctgaggaagagtccattatggaaacatttctgacagtggtgctagattcctcattt
cagctcgtgtctcttaacaaaccaggtggaccaggtctggctcatacctcatcaatccag
gagtgcataacgttaacgagacaacgagtgaaagaagtgcagaagatcttgcaagaagca
atttctgatatggaagttgactga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   RefGene (2)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (6)   
   RefSeq(nuc) (2)   
   GenBank (2)   
   EMBL (2)   
Protein domain (2)   
   Pfam (2)   
All databases (21)   

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