KEGG   Streptococcus ilei I-P16: N597_06440
Entry
N597_06440        CDS       T02880                                 
Name
(GenBank) 5-hydroxymethyluracil DNA glycosylase
  KO
K10563  formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
Organism
sip  Streptococcus ilei I-P16
Pathway
sip03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:sip00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    N597_06440
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:sip03400]
    N597_06440
Enzymes [BR:sip01000]
 3. Hydrolases
  3.2  Glycosylases
   3.2.2  Hydrolysing N-glycosyl compounds
    3.2.2.23  DNA-formamidopyrimidine glycosylase
     N597_06440
 4. Lyases
  4.2  Carbon-oxygen lyases
   4.2.99  Other carbon-oxygen lyases
    4.2.99.18  DNA-(apurinic or apyrimidinic site) lyase
     N597_06440
DNA repair and recombination proteins [BR:sip03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA glycosylases
     N597_06440
SSDB
Motif
Pfam: Fapy_DNA_glyco H2TH zf-FPG_IleRS zinc-ribbons_6 OrfB_Zn_ribbon NFACT_N Auto_anti-p27 Zn-ribbon_8 DUF6791 DZR Zn_Tnp_IS1595 zf-TFIIB HscB_4_cys
Other DBs
NCBI-ProteinID: AGY38598
UniProt: U5P8L6
Position
complement(1275016..1275840)
AA seq 274 aa
MPELPEVETVRRGLEKLILGKTIQSVEVKYPKMIQTDLDAFRQDLPGQEIRSMGRRGKYL
LFHLTDLVLISHLRMEGKYFFYPDEVPFRKHAHVFFHFTDGSTLVYEDVRKFGTMEVLVP
ELVDSYFVNKKIGPEPTEAEFKWPAFQAALKKSKKPIKSALLDQKLVAGLGNIYVDEVLY
RAKVHPARLGQSLTAPEARAVRKETIAVLAQAVEKGGSTIRSYSNAFGEDGTMQEQHQVY
GKTGQPCSRCGSPIEKIQLGGRGTHFCPHCQKVK
NT seq 825 nt   +upstreamnt  +downstreamnt
atgcccgagttaccagaagttgagaccgtccgacgtggtcttgagaaattaattctaggg
aaaaccatccaatccgtggaagtaaagtatcctaagatgattcagacagatctggatgct
tttcgtcaagatcttccaggtcaagagattcgatccatggggcgtcgtgggaaatacctc
ttgtttcatctgacggatttggttttgatctcgcatttgcggatggaaggcaagtatttc
ttttatccagacgaagtcccttttcgcaagcacgcccatgtcttctttcattttacagat
ggtagcaccctggtctatgaagatgtccgcaagtttgggaccatggaagtcctagtgcct
gagcttgtagacagttattttgtgaataaaaaaattggtccagagccgacagaagcggaa
tttaaatggcctgccttccaagcagctctgaaaaaatcaaagaaacccattaaatcagcc
cttttggatcaaaaattggtggctggtctgggcaatatctatgtggacgaggtgctctat
cgagccaaggttcatccagcccgtttggggcaaagtttgactgctccagaagccagagcc
gttcgcaaagaaacaattgccgtattagctcaggctgtcgaaaagggaggctccaccatt
cgctcctacagcaatgccttcggagaagatggcactatgcaggaacaacaccaagtctat
gggaaaacgggtcagccttgtagtcgttgtggctctccaatcgagaaaatccaacttggg
ggacgggggactcatttttgtccccattgtcaaaaggtaaagtaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (2)   
   KEGG ENZYME (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (13)   
   Pfam (13)   
All databases (24)   

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