KEGG   Ruegeria sp. TM1040: TM1040_0291
Entry
TM1040_0291       CDS       T00359                                 
Name
(GenBank) ribosomal large subunit pseudouridine synthase C
  KO
K06179  23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
Organism
sit  Ruegeria sp. TM1040
Brite
KEGG Orthology (KO) [BR:sit00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:sit03009]
    TM1040_0291
Enzymes [BR:sit01000]
 5. Isomerases
  5.4  Intramolecular transferases
   5.4.99  Transferring other groups
    5.4.99.24  23S rRNA pseudouridine955/2504/2580 synthase
     TM1040_0291
Ribosome biogenesis [BR:sit03009]
 Prokaryotic type
  rRNA modification factors
   23S rRNA modification factors
    TM1040_0291
SSDB
Motif
Pfam: PseudoU_synth_2 S4
Other DBs
NCBI-ProteinID: ABF63024
RoseoBase: TM1040_0291
UniProt: Q1GJZ2
Position
297539..298585
AA seq 348 aa
MSGVQMITVTEDDGGQRIDRWLRRLFPHVNQGRIEKMCRKGELRLDGGRVKANTRVEAGQ
VVRVPPLAESDMKPAEARPVKISDADAKMIRDCVIYKDDDVLVINKPAGLAVQGGSGTTK
HVDGLSEALRFDAEDKPRLVHRLDKDTSGLLVLARNRKAAQGLTAAFRHKNTRKIYWALV
AGVPTPYLGEIKTGLVKAPGHGKSGEGEKMIPVDPRDVDATPGAKRAHTYYATLYRVASR
ASWVAMEPVTGRTHQLRAHMAGMGHPIIGDGKYGGSGQENLGDGWGAQIGGLISKKLHLH
ARRLQFEHPVTGKVVTVTAALPDHMKESWDTFGWTEDLAADDPFETLF
NT seq 1047 nt   +upstreamnt  +downstreamnt
atgagcggcgtgcaaatgatcaccgtgaccgaagacgacggcggccagcggatcgaccgc
tggttgcggcgtctgttcccgcatgtgaaccagggccgcatcgagaagatgtgtcgcaag
ggcgagctgcgtctggatggcggtcgcgtcaaggccaacacccgtgttgaggcgggacag
gttgtgcgggtgcccccgctggccgagagcgacatgaaaccggccgaggcgcgcccggtg
aagatctcggatgctgacgccaagatgattcgcgattgcgtgatctacaaggacgacgat
gttctggtgatcaacaaaccggccggactggcggtgcagggcggctctggcaccaccaaa
cacgtagatggcctctcggaagcactgcgctttgacgccgaggacaagccgcggctggtg
catcgtctcgacaaggacacatccgggctcttggtgctggcgcgcaaccgcaaggcggcg
caggggctgaccgcagcctttcgccacaagaacacccgcaagatctactgggccttggtg
gcaggcgtgccgacgccctaccttggcgagatcaagaccgggctcgtaaaggcgccggga
catggcaaatccggcgagggcgaaaagatgatccccgttgatccgcgcgatgtggatgcc
acgcccggggcaaagcgcgcgcatacctattatgccacgctctaccgcgttgcgagccgt
gcaagctgggtcgcgatggagccggtgacgggccgcacccaccagctgcgtgcgcatatg
gcgggcatggggcatccgatcattggcgatggcaaatatggcggctcgggtcaggagaac
ctcggcgatggctggggcgcgcaaatcggcggtctgatctcgaagaaactgcacctgcat
gcgcgccgtttgcagttcgaacaccccgtcaccggcaaagtggtgacagtgactgccgcg
ctgcccgaccacatgaaagagagctgggacacctttggctggaccgaggatctggccgcc
gacgacccgtttgagacgctgttttga

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Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
   ROSEOBASE (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (12)   

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