KEGG   Setaria italica (foxtail millet): 101769185
Entry
101769185         CDS       T02818                                 
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
  KO
K14442  ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
Organism
sita  Setaria italica (foxtail millet)
Pathway
sita03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sita00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    101769185
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sita03019]
    101769185
Enzymes [BR:sita01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     101769185
Messenger RNA biogenesis [BR:sita03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Other 3'-5' decay factors
     101769185
SSDB
Motif
Pfam: OB_NTP_bind HA2_C Helicase_C HA2_N DEAD dsrm AAA_22 nSTAND3 T2SSE AAA_19 AAA_16 NACHT ATPase ABC_tran AAA_23 Dicer_dimer ATPase_2 Myosin_head
Other DBs
NCBI-GeneID: 101769185
NCBI-ProteinID: XP_004981781
UniProt: A0A368SEM8
Position
IX:5550890..5557770
AA seq 1156 aa
MRRGLRRGLGILLVPLPNAPSRPPPISLAALLLHPHRLNNGFSRRSFCSFPGGGRAVEQF
SDDEYDHEYEDLRPSSSVANIDEWRWKLSMLQRNAEEQEIISRDRRDRRDYDQIANLAKR
MGLYSQTYGRVIVASKVPLPNYRPDLDDKRPQREVVIPLSLQRRVEGLVQEHLDRALLSL
DKSGGNTESGSEAAGKADNVNLDEQHDSLLDRSVMEKILQRKSIRMRNFQRSWQESPEGV
KMLEFRKSLPAYKDKERLLAAIARNQVIVISGETGCGKTTQLPQFVLEAEIESGRGAFCN
IICTQPRRISAMAVAERVSTERGENLGESVGYKVRLEGMKGKDTHLLFCTSGILLRRLLS
DRNLNGVTHVFVDEIHERGMNEDFLLIVLKDLLSRRRDLRLILMSATLNAELFSSYFGGA
PTIHIPGFTHPVRAHFLEDILERSGYKLTSSNQLDDYGQDKVWKTQRQLLPRKRKNQITT
LVEDALKNSSFETYGSRTRDSLANWNPDCIGFNLIEAVLCHICRKERPGAVLVFMTGWDD
ISCLKDQLKAHPLLGDPNRVLLLACHGSMATAEQRLIFEKAPPNVRKVVLATNMAEASIT
INDIVFVVDCGKAKETTYDALNNTPCLLPSWISRASARQRRGRAGRVQPGECYHLYPRCV
YDAFAEYQLPELLRTPLNSLCLQIKSLQVGSIGEFLSAALQPPEPLAVQNAVEFLKMIGA
LDGNENLTDLGRYLSMLPVDPKLGKMLIMGSVFRCIDPILTVVAGLSVRDPFLLPQDKKD
LAGTAKSRFSAKDYSDHMALVRAYEGWKDAEREGSAYEYCWRNFLSAQTLQAIHSLRKQF
SYILKDSGLIDSDANINNSLSHNQSLVRGIICSGLFPGIASVVHRENSMSFKTMDDGQVL
LYANSVNAKYQTIPYPWLVFGEKVKVNAVFIRDSTGVSDSILILFGGAVAKGSMAGHLKM
LDGYIDFFMDPSLSECYLQLREELDKLIQKKLEDPNFDIHKEGKYILYAAQELTAGDLCE
GRFVFGRETSRAKLQSPEEEGKSSLIKDGMNPKSLLQTLLMRAGHTPPKYKTKHLKTNEF
RAMVEFKGMQFVGKPKRNKQLAERDAAIEALAWLTQTSGVKPQDEGDDSSPLDLTDSMLK
LLTRPRRHSKNNSRRR
NT seq 3471 nt   +upstreamnt  +downstreamnt
atgcgccgcggcctgcgccgcgggctgggcatcctcctcgtcccacttcccaacgcaccc
agccgcccgccgcctatctctctcgcggctctcctcctccacccccaccgcctcaataat
ggcttctcccgccgctccttctgcagcttccccggcgggggccgcgccgtcgagcagttc
tccgatgacgagtacgaccacgagtacgaggacctccggccgtcgtcgtcggtggcgaac
atagacgagtggagatggaagctgagcatgctgcagcgcaacgccgaggagcaggagatc
atctccagggaccggagggaccgccgggactatgaccagatcgccaacctcgccaagaga
atggggctctacagtcagacgtacgggagggttatcgtcgcgagcaaggtcccactgcca
aactacaggccggacctagatgacaagcggccgcaaagagaggtggtgatcccgctgagc
ttgcagaggagagttgaaggtcttgtgcaggagcatctagaccgtgcactcttgtcactg
gataaaagcggtggcaacacggaaagtggttctgaggcggctgggaaagctgacaatgtg
aacctggacgagcagcatgattctctgcttgataggtcagtcatggagaagatacttcag
aggaagagcattcgaatgcgcaattttcagagaagttggcaggaatcacctgaaggtgtt
aagatgttagagtttcggaaatcgcttccagcatacaaggacaaagaaaggctcctagca
gccattgcacgcaatcaggttatagtaatttctggggagacaggatgtgggaaaacaaca
cagctgcctcaatttgtattggaggcggaaatagagtctggccgaggggccttttgtaac
ataatttgtacacagccacgaaggatatctgcaatggcagttgcagaaagagtatccact
gagagaggagagaaccttggtgaatcggttggctataaagttcgactggagggaatgaag
ggaaaagacacacatttgcttttctgcaccagcggcattttactaagacgattgctgagt
gaccgaaacttgaatggcgtgactcatgtatttgttgatgaaatacatgaaaggggcatg
aatgaagatttcctgttgattgtactgaaagatctattatcacggcgccgtgatttgagg
ttgatattgatgagtgctactctaaatgcggaactgttctctagttattttggaggggca
ccaactatccacattcctggattcacgcatccagtgagggcacattttctggaagatata
ttggagaggtcgggctacaagttgacttcaagcaatcaacttgatgattatggccaagat
aaagtctggaaaactcagaggcagctgctgcctagaaaaaggaaaaatcaaatcactaca
cttgtcgaggatgccctaaaaaattcaagctttgagacatatggttccaggacgcgagat
tctctagcaaattggaatcctgattgcattgggttcaacctcatagaggcggttctgtgc
cacatatgtcgcaaagagcgacctggtgctgttttagttttcatgactggatgggatgat
attagttgcttgaaggatcaactgaaagcacatccgttgttaggtgatccaaacagggtt
ttgctgcttgcatgccatggttctatggctactgctgagcagaggctaatttttgagaag
gcacctcctaatgttcggaaggtagtcctagccacaaacatggcagaagcaagtattaca
ataaatgatatcgtttttgttgtggattgtggtaaagcaaaggaaactacatatgatgct
ctgaacaataccccctgcttactcccctcatggatttcaagagcttctgcccggcagagg
aggggcagagctggccgtgtgcaacctggagaatgctatcatctttatcctagatgtgtg
tacgatgcattcgcagaatatcagcttccggagcttcttagaactcctttgaattcatta
tgtttgcagataaaaagtttgcaagttggcagcatcggagagttcctatcagctgcttta
cagcctcctgaaccactagctgtccaaaatgcagtggaattcctgaagatgattggcgca
ttagatggaaatgagaaccttactgatcttggacgttacctttccatgcttccagttgat
ccgaaactgggaaagatgcttataatgggctcagtttttcgctgcatagatcctatactt
actgtagtcgctggactgagtgttcgggatcctttcctgttgccacaggacaagaaggat
ttggcaggaactgcgaaatcaagattctcagcaaaggattatagtgaccatatggccctt
gttcgggcttatgaaggatggaaggatgcagagagagaagggtctgcttatgaatactgt
tggagaaatttcctttctgctcaaacactacaagctattcactcacttcggaagcaattc
agctatattttaaaggattctggtttgatagactctgatgcaaatataaataacagtttg
agccataatcaatcattggtccgtggcatcatatgttctgggctttttcctgggatagca
tctgttgtgcatcgagaaaactcaatgtcctttaagaccatggatgatggccaagttctt
ctttatgctaattcagtgaatgcaaagtaccagaccatcccatatccatggttggtcttt
ggtgagaaggtgaaggtgaatgctgtcttcatccgtgattcaaccggagtatcagactcc
atactgatcttatttggtggtgctgttgcaaaaggaagcatggctgggcacttgaagatg
ctcgatgggtacattgatttctttatggatcccagcctttccgaatgctacttgcaactt
agagaagaacttgataaacttatacagaagaagcttgaagacccgaactttgacatccac
aaggaaggcaagtacatcctatacgccgcgcaggagctcaccgccggcgacctatgcgag
gggcggttcgtgttcgggcgcgagacgagccgggccaagctccagagccccgaggaggag
ggcaagagcagcctgatcaaggatgggatgaaccccaagagcctgctgcagacgctgctg
atgcgcgcggggcacaccccgcccaagtacaagacgaagcacctcaagacgaacgagttc
cgggccatggtggagttcaaggggatgcagttcgtggggaagccgaagcggaacaagcag
ctggcggagcgggacgcggccatcgaggcgctcgcgtggctgacgcagacctccggcgtg
aagccgcaggacgagggcgacgactcctcgccgctggacctgacggacagcatgctgaag
ctgctcacgaggccgaggcggcactcgaagaacaactccaggagacggtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (18)   
   Pfam (18)   
All databases (31)   

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