KEGG   Shewanella japonica: SJ2017_2811
Entry
SJ2017_2811       CDS       T04959                                 
Name
(GenBank) DNA-3-methyladenine glycosylase 2
  KO
K13529  AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
Organism
sja  Shewanella japonica
Pathway
sja03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:sja00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    SJ2017_2811
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:sja03000]
    SJ2017_2811
   03400 DNA repair and recombination proteins [BR:sja03400]
    SJ2017_2811
Enzymes [BR:sja01000]
 3. Hydrolases
  3.2  Glycosylases
   3.2.2  Hydrolysing N-glycosyl compounds
    3.2.2.21  DNA-3-methyladenine glycosylase II
     SJ2017_2811
Transcription factors [BR:sja03000]
 Prokaryotic type
  Helix-turn-helix
   AraC family
    SJ2017_2811
DNA repair and recombination proteins [BR:sja03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA glycosylases
     SJ2017_2811
SSDB
Motif
Pfam: Ada_Zn_binding AlkA_N HTH_18 HTH_AraC HhH-GPD SWIRM DUF6233 HTH_3
Other DBs
NCBI-ProteinID: ARD23092
Position
complement(3322757..3324391)
AA seq 544 aa
MGKVTLSPSLTYRYMMTSTHNQPHPDNELEPVLEPSIACYLPNDVCRQARLSRDARFDGR
FFIGVKTTGIYCRSICPASPPKEQNVVYFDSAIKASQAGLRPCLRCRPDSAPESNAWQGS
STSLQRAISLIEGGSLSGENAQSLTELSARLGISSRYLSRLFNQQLGTSPKKYALYRQLM
FAKQLLHQTSLSITDVAMAAGFNSIRRFNEVFKSQLLLTPTQLRKTQKVNKSAETNSQGI
KLLLDYRPPYSWQDIWSFYQLRAVDGMEWLNETTYAYGRSFAFSFNEQTVTGVYEVVPVK
GKNQLALTVEFEQTEHIRYLHQTVRFIRQRLDLDADMDVIEQSFEPLQNLGMKVKQGLRI
PGTASVFEAGCRAVLGQQVSVIQASKLLNILVKNYGAVKRVGGRDVQFFPSAESIAAASL
DEFKMPESRKRALNGLGDFVAKNPFACPSKWIDIKGIGPWTIAYAQMRGESNPDVFLGGD
LVIKNRIKALLLALSDLPDNNPFAIANKAEFTPRLYQTFVNNLAKQVSPWGSYLTFQLWS
QNEN
NT seq 1635 nt   +upstreamnt  +downstreamnt
ttgggtaaagtgacgttatctccatcactgacttatcgatatatgatgactagtacacac
aaccagccacatccagataacgagctcgaaccggtgctagaaccttcaattgcatgttat
ttgccgaatgatgtttgcagacaggcgaggttaagtcgtgacgcacgctttgatggtcgc
tttttcattggcgtaaaaacgacaggaatttattgccgttcgatttgtcctgcttctcct
cctaaagagcaaaatgtggtgtatttcgattcggcgataaaggcttctcaagctgggctg
aggccttgtttacgctgccgacctgacagtgctccagaatctaatgcatggcagggttca
agcactagtttgcagcgagctatttcgttaatcgaaggtggcagcctttctggtgagaat
gcgcagtctttaacggaattatcagcaagattagggataagctcccgttatttgtcacgt
ttatttaatcaacaactcgggacttcacctaaaaaatatgccttatacaggcaattgatg
tttgcgaaacaattactacatcaaaccagtttatcgataacggacgtcgcaatggcggca
ggtttcaatagcataagacgctttaatgaggtgtttaaatcacaactactactgacgcca
acacagctgcgcaaaacccaaaaagtaaacaagtctgcagaaaccaactcgcaaggtatt
aagttattgttggattatcggccaccgtattcatggcaggatatttggtcgttttatcaa
ttgcgtgcagtagatggtatggagtggctgaatgaaacaacttatgcttatgggagaagt
tttgctttttcattcaatgagcaaacagtgacaggtgtctatgaagttgttcctgtcaaa
ggcaagaatcaattagcgttaacagttgaatttgaacagactgaacatatccggtattta
catcaaaccgtgcgatttatcaggcagcgactagatttagacgcggatatggacgtgatt
gaacaatcatttgagccgctgcagaacttagggatgaaggtgaaacaaggcttgagaatt
ccaggtactgcttcagtatttgaggcggggtgtcgcgcagtacttggccagcaagttagt
gtgattcaagccagtaaacttctcaatatactcgttaaaaattatggtgccgttaagcga
gttggaggtagggatgtgcagttttttcctagcgctgagtccatcgctgcagcgagttta
gatgaatttaaaatgcctgaatctcgaaaacgtgcgctaaatggccttggtgactttgtt
gctaaaaatccatttgcttgccctagtaaatggatagatataaaaggcataggtccttgg
actattgcttatgctcaaatgcgaggagagagtaaccctgatgtgtttttgggcggagac
ttagtgattaaaaatcgaattaaagccctcttgcttgccttaagtgacttgcctgataac
aacccgtttgcgatagcaaataaggctgagtttacccctaggttgtatcaaacattcgtt
aataacctcgctaagcaagttagcccatggggcagttatctcacgtttcaattgtggagc
caaaatgaaaattaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (8)   
   Pfam (8)   
All databases (18)   

Download RDF
DBGET integrated database retrieval system