KEGG   Shewanella japonica: SJ2017_3157
Entry
SJ2017_3157       CDS       T04959                                 
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
  KO
K00962  polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
Organism
sja  Shewanella japonica
Pathway
sja03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sja00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    SJ2017_3157
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sja03019]
    SJ2017_3157
   03016 Transfer RNA biogenesis [BR:sja03016]
    SJ2017_3157
Enzymes [BR:sja01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.8  polyribonucleotide nucleotidyltransferase
     SJ2017_3157
Messenger RNA biogenesis [BR:sja03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     SJ2017_3157
Transfer RNA biogenesis [BR:sja03016]
 Prokaryotic type
  tRNA degradation factors
   SJ2017_3157
SSDB
Motif
Pfam: RNase_PH RNase_PH_C PNPase S1 KH_1 KH_2 S1_2 KhpA-B_KH aRib
Other DBs
NCBI-ProteinID: ARD23426
Position
complement(3742589..3744691)
AA seq 700 aa
MNPIVKSFEYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKVADPSRDFFPLTV
NYQEKTYAAGKIPGGFFKREGRPSEDETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVD
PQIEPDMVAMIGTSAALSISGIPFNGPIGAARVGYIDGEYLLNPTVDQVAESDLDLVVAG
TESAVLMVESEAKSLAEEIMLGAVTYGHDQQQVVVQAIAEFKAEAGKPTWDWTAPVQDQD
LVAQIKELAEEGMTAAYQIEVKQDRYAQVGVVKAAAKEALIAQNPDVDTREVDNLLGSLE
KDVVRGRIISGKPRIDGREPDMIRALNVLAGVLPRTHGSSLFTRGETQALVTCTLGTERD
AQKIDSIMGERTNRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGINAVMPSAEEF
PYSVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVLSDI
LGDEDHLGDMDFKVAGTRDGITALQMDIKIEGITKEIMDIALQQAYGARVHILNVMDQAI
GGAREDISDHAPRITTIKINPEKIRDVIGKGGATIRALTEETGTTIELDDNGTVKIASSN
GEATKEAIRRIEEITAEVEVGRIYKGKVIRIVDFGAFVNILPGKDGLVHISQISEERVAN
VSDHLEMNQEVDVKVMEVDRQGRVRLSIKEANAKEEAAAE
NT seq 2103 nt   +upstreamnt  +downstreamnt
gtgaatccaattgtaaagagttttgagtatggtcaacataccgtcaccttagaaacaggt
gttattgcacgtcaagcagatgctgcagttttagcgagcatgggcgatacaacagtttta
gtaactgttgttggtaaaaaagtagcggatccaagccgtgacttcttcccattaacagtt
aactaccaagaaaaaacctacgcagcaggtaaaatccctggtggtttcttcaagcgtgaa
ggtcgcccttctgaagatgaaacactgattgctcgtttaatcgaccgtccaattcgtcct
ttatttccgaacggttttaaaaacgaagttcaagtaatcattacggtagtttcagttgat
ccacaaattgaaccagatatggttgcaatgattggtacttcagctgcgctttctatttca
ggtatcccatttaatggccctatcggcgcagcacgcgttggttacattgatggcgaatat
ctattaaacccaacagttgatcaagttgctgaaagtgaccttgacttagttgttgctggt
actgaatcagctgtattgatggttgaatcagaagcaaaatcattagctgaagaaatcatg
ctaggtgcggtgacttacggtcacgaccagcagcaagttgttgttcaagctattgcagaa
ttcaaagctgaagcgggtaaacctacttgggattggactgctccagtacaagatcaagat
ttagtagctcaaattaaagagttagctgaagaaggcatgactgcggcttaccaaatcgaa
gttaagcaagaccgttatgctcaagttggcgtagttaaagcggctgctaaagaagcattg
attgctcaaaatcctgatgttgatactcgtgaagttgacaacttattaggtagtcttgaa
aaagacgtagttcgtggtcgtattatcagtggcaagccacgtatcgacggtcgtgaacca
gatatgatccgcgcattaaacgtattagcgggtgtacttccacgtacacacggtagttct
ttatttacccgtggtgaaactcaagcattagtaacttgtactttaggtactgaacgtgat
gctcaaaaaattgacagcatcatgggcgagcgtactaatcgctttatgcttcattacaac
ttccctccttattctgttggtgaaacaggtatggttggttcgcctaagcgtcgtgaaatt
ggtcacggtaaattagcttggcgtggtatcaatgctgttatgccttctgctgaagaattc
ccatacagtgttcgtgttgtatctgaaatcacagaatcaaacggttcaagctctatggct
tctgtttgtggtacttcattagcgttaatggatgcgggtgtacctatcaagacttctgtt
gctggtatcgcaatgggtctagtaaaagaaggcgacgactttgttgttctttctgatatc
ttaggtgatgaagatcacttaggtgacatggactttaaagtagcgggtactcgtgacggt
attactgctctgcagatggatatcaagattgaaggtatcactaaagagatcatggacatc
gcactgcaacaagcatacggcgcacgtgttcatattcttaacgttatggaccaagcaatt
ggtggcgcacgtgaagatatctctgatcacgctccacgtatcacgactatcaagattaat
cctgagaagatccgtgacgttatcggtaaaggtggtgcgactatccgtgcacttactgaa
gaaacaggtacaacaattgagcttgacgacaacggtactgtgaagattgcatcttcaaac
ggtgaagcaacgaaagaagctatccgtcgtatcgaagaaatcactgctgaagttgaagtg
ggtcgcatctataaaggtaaggttatccgtatcgttgatttcggtgcattcgttaacatc
ctacctggtaaagacggcttagttcacatctcacaaatcagtgaagagcgtgtagctaac
gtttctgaccatcttgaaatgaatcaagaagttgacgttaaagtgatggaagttgaccgt
caaggtcgtgtaagactttctatcaaagaagcgaacgctaaagaagaagctgctgcagaa
taa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (9)   
   Pfam (9)   
All databases (19)   

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