KEGG   Shewanella japonica: SJ2017_3160
Entry
SJ2017_3160       CDS       T04959                                 
Name
(GenBank) tRNA pseudouridine synthase B
  KO
K03177  tRNA pseudouridine55 synthase [EC:5.4.99.25]
Organism
sja  Shewanella japonica
Brite
KEGG Orthology (KO) [BR:sja00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:sja03016]
    SJ2017_3160
Enzymes [BR:sja01000]
 5. Isomerases
  5.4  Intramolecular transferases
   5.4.99  Transferring other groups
    5.4.99.25  tRNA pseudouridine55 synthase
     SJ2017_3160
Transfer RNA biogenesis [BR:sja03016]
 Eukaryotic type
  tRNA modification factors
   Psudouridine synthases
    SJ2017_3160
 Prokaryotic type
    SJ2017_3160
SSDB
Motif
Pfam: TruB_N TruB_C_2 TruB-C_2
Other DBs
NCBI-ProteinID: ARD23428
Position
complement(3747647..3748591)
AA seq 314 aa
MARRRKGRFINGIVLLDKGTGISSNHALQRVKRLYNANKAGHTGALDPLATGMLPVCLGE
ATKFSQHLLDADKRYLVTAKLGERTDTSDSDGEVVQIRPVKFEQKLLEDSLEHFRGDTMQ
VPSMFSALKYQGQPLYKYAREGIEVPREARPITVFELLFVSLEGDDLTLDIHCSKGTYIR
TIIDDLGEMLGCGAHVTMLRRTQVAGYPYEKMVTLEQLTELAEHVDKEDESSFSVLDDLL
LPMDTAVANFTEVNLPDACEQFIMQGQPVQATGLKAGELVRMTLGEQRRFIGIGTMNDDG
LLAPKRLVVDHSAE
NT seq 945 nt   +upstreamnt  +downstreamnt
atggctcgtcgtcgcaaaggtcgttttattaatggcatcgtacttttagataaaggtact
ggtatcagttctaaccatgctttgcaacgcgtcaaacgtctttataacgccaataaagca
ggccatactggtgctttagaccctttagccacaggtatgctccccgtttgcttaggcgaa
gcaaccaagttctctcaacaccttttagatgcggacaagcgttatttggtgacagctaaa
ttaggtgaaagaacagacaccagtgattctgatggtgaagttgttcagatccgaccggtt
aagtttgagcaaaagctgttagaggattctttagagcattttcgcggtgacaccatgcaa
gtgccttcaatgttctctgcactaaagtatcaagggcagcctttatacaagtatgctcgt
gaaggcattgaggttcctcgagaagcccgtcctattaccgtatttgagttgctatttgtt
agcctagaaggcgatgacttaacacttgatattcattgctcaaaaggcacctacattcgt
accatcattgatgatttaggtgaaatgttaggttgtggcgcacatgtcactatgctgaga
cgaacccaagttgcaggctatccatatgagaaaatggtgacgcttgagcagttaactgaa
ttagctgaacacgtcgataaagaagatgagtcttcttttagcgtgttagatgatttgttg
ttgccaatggacactgctgtagcaaacttcaccgaagttaatttaccggatgcttgtgag
caatttattatgcaaggtcagcctgttcaggctacaggcttaaaagcaggtgaattggtc
agaatgacgttaggtgagcagcgtcgctttatcggaataggtaccatgaatgatgatggt
ttgctggctcctaagcgtctagttgttgatcacagtgcagaataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (3)   
   Pfam (3)   
All databases (11)   

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