KEGG   Sanguibacter keddieii: Sked_27640
Entry
Sked_27640        CDS       T01214                                 
Name
(GenBank) DNA/RNA helicase, superfamily I
  KO
K03657  ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
Organism
ske  Sanguibacter keddieii
Pathway
ske03420  Nucleotide excision repair
ske03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ske00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    Sked_27640
   03430 Mismatch repair
    Sked_27640
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ske03400]
    Sked_27640
Enzymes [BR:ske01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     Sked_27640
DNA repair and recombination proteins [BR:ske03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Sked_27640
   MMR (mismatch excision repair)
    Other MMR factors
     Sked_27640
SSDB
Motif
Pfam: UvrD-helicase UvrD_C AAA_19 PDDEXK_1 UvrD_C_2 AAA_30 Sulf_transp
Other DBs
NCBI-ProteinID: ACZ22666
UniProt: D1BAW5
Position
complement(3076840..3080175)
AA seq 1111 aa
MTTTRPTLSAADIADLLGQHRPTPEQTAVIEAPLAPMLVVAGAGSGKTETMSARVVWLIA
NGLVEPQEVLGLTFTRKAAGELSDRVGRRLRQLRRSRAGSGGSALDALDRPTISTYNSYA
ASLVGDHGLRIGREPGARLLSEASSWQVASDLVESWHGDLGTDAAVSTVVAAVLDLSNAL
SEHLLTVAEAREQVARLVEQITSTPFGGKRRSLHADLGKLARSLGERHALLEVVEAFQQR
KRAMDALDFGDQVSLAAQLAVEVDAVAAGERARYAVVLLDEYQDTSYAQIRLLSSLFGDG
HPVTAVGDPNQSIYGWRGASASGPARFPDQFRDREGRPAAVHRLSTSWRNDLAILDVANT
TSRPLYLADPDNSLPSLEPRPSAGLGSVHGVYSATVEEEGAAIAEFVAKRWEPGTTTAAV
LCRARSQFPAIEAALRKRGLPVEVVGLGGLLTTPEVVDLVALLEVVHDPSRGDSLMRLLT
GPRLNLGAADLHALASRSAELGRRNRADRPVEGDVTDERSIVDALDDLPAEGWVGPDGRS
FSDAGWGRLRSLAGMLRELRALTYLSLPELVDRAERALGLDIEMALVAARARDDAPSTRP
TADPRGRAHLDAFRDVAATFADTSQLATLGAFLAWLSTAQQRERGLDRPQGAPDPEAVQL
ITVHASKGLEWDVVAVPGLVDGAFPSTRTTGDKGPTSSGWLTGLGQLPFPLRGDARDLPE
LSLAGADDSAELNARLVDFRERCGEHEVAEERRLAYVAFTRARSDLLLTGAWWRSATKPS
TPSLFLTELHEAGVLAEFTVAEQPEPGTSNPREDLTPEALWPPVDEPADGPEGSAAEAAD
GSATLREPLELLRRSRDLVLDALVDVAQHPASTEPVLARDGTDLTELSEILLAERLTRRT
AVTAMEFPAHVSASGLVEIARDRDAYALALRRPVPRQPSVHSRRGTAFHLWVERQYGSTS
LFDLDDMPGADDDLVDGDTALADLQRTFEASVWSGLVPLEVEVAIDTMIAGVITRTRIDA
VFLDPEQPGGPDRAPGVVVVDWKTGRAPTDREAARAREVQLAVYRIAWSQWSGTPLEDVS
AAFYYVADDTTVRPQRLAGLAELEALVRGEV
NT seq 3336 nt   +upstreamnt  +downstreamnt
atgaccaccacgcgcccgacgctcagcgccgccgacatcgccgacctgctcggccagcac
cggcccaccccggagcagaccgccgtgatcgaggccccgctcgccccgatgctcgtggtc
gcaggtgccggctccggcaagaccgagacgatgtcggcgcgtgtcgtgtggctcatcgcc
aacggtctcgtcgagccgcaggaggtgctcggcctgaccttcacgcgcaaggcggccggc
gagctctcggaccgcgtgggccgtcgcctgcggcagctgcgccgcagccgcgcggggtcc
ggcggctccgccctcgacgccctcgaccggcccaccatctcgacctacaactcctacgcg
gcctcgctcgtcggagaccacgggctgcggatcggccgcgagccgggtgcgcgcctgctc
tccgaggcgtcgagctggcaggtggcgagcgacctcgtcgagagctggcacggcgacctc
gggaccgacgccgccgtctcgacggtcgtcgcagcggtgctcgacctctcgaacgccctg
agcgagcacctgctcaccgtcgccgaggcccgcgagcaggtggcccggctcgtcgagcag
atcacctcgacgcccttcggcggcaagcgccgatccctccacgccgacctcggcaagctc
gcgcggtccctcggggagcggcacgcgctgctcgaggtggtcgaggccttccagcagcgc
aagcgcgccatggacgccctcgacttcggcgaccaggtgtcgctcgccgcgcagctggcc
gtcgaggtcgacgccgtcgccgcgggggagcgcgcccggtacgcggtcgtgctgctcgac
gagtaccaggacacctcctacgcgcagatccgcctgctgtcgtcgctgttcggcgacggc
cacccggtcaccgccgtcggcgacccgaaccagtcgatctacgggtggcgcggggcgagc
gcctccggcccggcccggttccccgaccagttccgggaccgcgaggggcgtcccgccgcg
gtccaccggctgagcacgtcctggcgcaacgacctcgcgatcctcgacgtcgccaacacg
acctcgcgcccgctctacctcgccgaccccgacaactcgctgccgtcgctcgagccccgg
ccctccgccggcctcggctcggtgcacggcgtgtactccgcgaccgtcgaggaggagggc
gccgcgatcgccgagttcgtcgccaagaggtgggagccgggcaccaccacggctgcggtg
ctgtgccgtgcccgcagccagttccccgccatcgaggcggcgctgcgcaagcgtgggctg
ccggtcgaggtcgtcggtctcggtgggctgctcaccacccccgaggtcgtcgacctcgtc
gcgctgctcgaggtcgtccacgacccgtcgcgcggcgactcgctcatgcggctgctcacc
ggtccgcggctcaacctcggggccgccgacctgcacgccctcgccagccggtccgcggag
ctcggccgccgcaaccgtgccgaccgcccggtcgagggggacgtgaccgacgagcgctcg
atcgtcgacgctctcgacgacctgcccgcagagggctgggtcgggcctgacgggcgctcc
ttctcggatgccgggtgggggcggctgcggtcgctcgccgggatgctccgcgagctccgc
gccctcacctacctgtcgctgcccgagctcgtggaccgggccgagcgagccctcggcctg
gacatcgagatggccctggtcgccgcccgcgcccgcgacgacgcccccagcacccgcccg
accgccgacccgcggggacgggcgcacctcgacgccttccgcgacgtcgccgcgaccttc
gccgacacgtcacagctcgccaccctcggcgcgttcctcgcctggctgtcgacagcccag
cagcgcgagcgggggctcgaccgacctcagggcgccccggaccccgaggcggtccagctc
atcaccgtgcacgcctcgaaagggctcgagtgggacgtggtggccgtccccggtctcgtc
gacggggccttcccgtcgacccgcaccaccggcgacaagggacccacctcctccggttgg
ctcacgggcctggggcagctgccgttcccgctgcgcggcgacgcccgcgacctccccgag
ctctccctcgcaggggccgacgactccgccgagctcaacgcgcggctcgtcgacttccgg
gagcggtgcggggagcacgaggtcgccgaggagcgccgcctcgcctacgtcgccttcacc
cgtgcacggagcgacctgctgctcaccggggcctggtggcgcagcgcgaccaagcccagc
acgccctcgctgttcctcaccgagctgcacgaggccggcgtcctcgccgagttcaccgtc
gccgagcagcccgagcccgggacctcgaacccgcgcgaggacctcacgcccgaggcgctc
tggccgcccgtcgacgagcctgcggacgggccggaggggtcggccgccgaggccgcagac
ggcagcgcgaccctgcgcgagccgctcgagctgctgcggcgctcgcgcgacctggtcctc
gacgccctcgtcgacgtcgcgcagcacccggcgagcaccgagcccgtgctcgcccgcgac
ggcacggacctcaccgagctcagcgagatcctgctcgccgagcgcctgacccgacgcacg
gcggtgaccgcgatggagttccccgcgcacgtctccgcctccgggctcgtggagatcgcc
cgcgaccgtgacgcctacgccctcgcgctgcggcgcccggtgccccggcagccgtcggtc
cactcacgacgcggcacggccttccacctctgggtggaacgccagtacggctcgacgtcg
ctgttcgacctcgacgacatgcccggcgcggacgacgacctcgtcgacggcgacactgcg
ctcgccgacctccagcgcaccttcgaggcgtcggtgtggtcgggactggtcccgctcgag
gtcgaggtcgccatcgacacgatgatcgccggggtcatcaccaggacccggatcgacgcg
gtgttcctcgaccccgagcagccgggcggaccggaccgtgcaccgggcgtcgtcgtcgtc
gactggaagaccgggcgggcgccgaccgaccgggaggcggcgcgggcccgagaggtccag
ctcgccgtgtacaggatcgcctggtcccagtggtcgggcaccccgctcgaggacgtctcc
gctgcgttctactacgtcgccgacgacacgaccgtgcggccgcagcgcctcgcggggctc
gccgagctcgaggcgctcgtgcggggtgaggtctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (23)   
   KEGG ORTHOLOGY (1)   
   RefGene (20)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (38)   

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