KEGG   Saccoglossus kowalevskii (acorn worm): 100371816
Entry
100371816         CDS       T04123                                 
Name
(RefSeq) collagen alpha-1(XI) chain-like
  KO
K19721  collagen type V/XI/XXIV/XXVII, alpha
Organism
sko  Saccoglossus kowalevskii (acorn worm)
Pathway
sko04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:sko00001]
 09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    100371816
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:sko00536]
    100371816
Glycosaminoglycan binding proteins [BR:sko00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   100371816
SSDB
Motif
Pfam: Collagen COLFI Laminin_G_3 Laminin_G_2
Other DBs
NCBI-GeneID: 100371816
NCBI-ProteinID: XP_006814015
Position
Un
AA seq 1659 aa
MARPRKYSRHNSSPWESVLFFSLFAAVFSCTKCTVVPIPPGATDILEVAGFRNEKQLRGV
HKADGFCLDRPVSETSRYKLGTSDTAFRLEEEAQISIPTLELFYDDFPDDFSIIATVRSE
KTSETSLVTIYGSDGIAQLGIELSNRMTKFIYQDYYPRMPGDDMTTFPADIADGNWHRIA
FSVRGDMITMLSDCKNNYTQTLGRDPFSKIDTDGIVVIGRNLRKPTIFNGDIQQLIVTRS
PYDAYDYCTLYTPDCNTPLPEYPQNEEAGSTPDGGFITDFPPYVPGTGGQGQKGQKGEPA
VLEPGVFIPGPPGPQGPQGPEGPMGYDGPPGPQGEKGAKGDEGRDGFNGERGFPGAPGPV
ILIPSAISDGSDHKGPNSGAMAAFTNLLQTQRNALIGPSGPIGLTGKIGPPGYPGTLGPK
GDEGDMGPSGPPGTPGPQGLPGKQGRRGRSGKDGMRGSPGAVGTKGDRGFDGLPGMPGPK
GHMGNPGPQGLMGPAGITGEPGDDGQSGPMGPSGEPGPRGLPGPRGPTGLQGVPGIPGGP
GLEGPKGSSGLPGQPGLRGNPGIQGSTGPPGPQGPMGSPGDPGPEGKPGMPGLPGIDGPP
GHSGKDGPSGDKGDTGVGGPQGPLGYAGPIGMKGDRGIRGQTGSKGQKGAEGYQGFKGDM
GPKGNRGANGETGPRGPEGNNGVKGIQGIQGDAGAMGPPGEKGKMGIPGLPGYPGRMGQK
GSLGPSGRRGRTGLKGSRGHPGTNGEPGSQGSPGPRGQRGARGQRGTRGPKGSEGQEGPE
GQQGERGFEGKQGPQGPPGVIGPQGPSGERGPLGERGVPGSPGPSGEPGLPGEAGKEGLP
GPPGPVGPEGKIGPPGIQGFPGDRGMPGAEGPIGLKGDMGPSGPPGPQGSSGPPGPPGEA
GSIGLPGQPGPVGSPGPAGDKGSIGDDGPPGPAGRDGQPGIRGLPGPPGPEGPPGEEGET
GEPGPPGMKGSKGARGLSGPEGPAGERGPEGMPGPSGEPGEPGIPGPVGPAGQKGSDGSR
GAPGPQGLPGQQGMPGTPGSKGEIGDDGPRGVQGAAGPPGKPGDRGAEGVPGMVGPRGPE
GDRGDKGNQGEQGPRGFPGERGPTGSIGEKGNQGDEGAQGQPGAYGPRGEPGNEGPKGHR
GPSGPPGPPGSSGVQGPPGKDGTKGERGQRGEIGQTGAPGPQGDLGPPGPRGSPGPPGTN
GQEGEQGPKGERGDKGELGPQGMPGATGPMGRPGPTGADGPRGPPGPEGAQGGEGPAGLP
GLAGPMGMTGDKGDKGEQGVKGNKGDKGPIGLTGPNGPLGEKGSRGEVGQEGDMGPKGEP
GLTGPPGPLGPDGPPGLPGIEGGTGDKGDKGDVGPKGDLGLTGPAGPPGPPATIENLQQL
VEMGLLDATRQMMRDEAERRRRAAGDENDLPPEYTDGLEEIFGSLEALKIEIEQMKRPIG
TRFNPARTCKDLYMCHEDFPDGMYWIDPNQGCSKDAIEVFCNFTAGGETCVQPDESTGKL
VAGSFDESILDDVNASVTPRGYRKARPGDWFSEFKQGDLISYSNVGVVQMTFLRLLSASA
KQNFTYTCHHSVGWYDQASDNYDKAVKLMGANEEEFAYDSNYLPTVIKDGCKSAPKRSST
VFEIETTKLHQLPIIDFMPGDFGKPDQRFGYEAGPICFN
NT seq 4980 nt   +upstreamnt  +downstreamnt
atggcccggcctaggaaatatagtcggcataattcaagcccttgggagagcgttttgttc
ttcagtctatttgcagcagtcttttcatgcacaaaatgcacggttgttccaattcccccg
ggcgcaacagatattttagaggttgccggatttagaaacgaaaagcaattacgaggagta
cacaaggcagacggcttttgtttagacaggccagttagtgaaacgtcgagatataaactg
ggcacatctgatacagcctttcgactagaggaagaggcgcaaattagcataccaacgctg
gagttattttacgacgattttcctgacgatttttccatcattgccacggtgagatcggag
aagacatcggaaacaagtttggttacgatctacgggagtgatggaatcgcgcaactcggc
atcgagcttagcaacagaatgacaaagtttatctaccaagattactatcccagaatgcct
ggcgacgatatgaccacttttccagctgatattgcggatggcaattggcataggatagct
ttcagtgttcgtggtgacatgataacgatgctgtcagattgcaagaataactacacacaa
acactcggacgtgacccattttcaaagatagacacagacggcattgtggtcatcgggagg
aacctacgaaaaccaaccatttttaacggagatatacaacagctgatagttacacgtagt
ccatacgatgcttatgactattgtacactgtatacaccagactgcaacacaccattgccc
gaatatccacagaatgaagaggccggatcaacaccggacggaggattcataacagatttc
ccaccttatgtgcctggtactggcggacaaggacaaaaaggacagaaaggtgaacccgcg
gttctcgaaccgggtgtgttcataccaggaccgccgggcccacaaggaccacagggtccc
gaaggtccgatgggatacgatggcccgcctggtccacagggagaaaaaggtgcaaaaggt
gacgaaggtcgtgatggcttcaatggggagaggggtttcccaggcgcacctggacctgtt
atacttatacccagtgccatctcagatgggagcgatcacaaaggacccaatagcggagca
atggctgctttcactaatttattgcagacgcaaaggaacgctctaattggcccatctggt
ccgattggtttaactggtaaaattggacccccgggttatccaggaactcttggccccaag
ggagatgaaggtgacatgggcccatccggcccaccgggaactccaggaccacaggggtta
ccgggcaaacagggaagaaggggaagaagtggcaaagatggcatgagggggagtccgggc
gccgttggtacaaagggggatcgtggtttcgatggattgccaggaatgccaggaccaaaa
ggtcacatgggcaatccgggaccacaagggctgatgggtccggccggtattaccggggaa
ccaggtgacgacggacaatccggtccgatgggcccgagtggtgagccaggtcccaggggt
ttacctggtcccaggggaccaacaggactacagggtgtgccgggtatacctggtggtcct
ggtttggagggtccaaagggtagcagcggacttcctggacaaccaggtctgaggggaaat
cctgggattcaaggttcaacgggtccacctggcccacaaggacccatgggatctcctgga
gatcccggtcctgaaggtaagccaggcatgccgggattaccaggaatagatgggccaccg
ggtcactctggaaaagatggtccgtcaggagacaagggagacacgggagttggcgggcct
caggggcctcttgggtatgctggtccaattggaatgaaaggagacagaggtatacgtggt
cagactggtagtaaaggtcagaagggtgctgaaggttaccagggatttaaaggtgacatg
ggtccgaaggggaataggggggccaatggtgaaacaggtccacgggggccagaagggaat
aacggtgttaagggtatccaaggaatacagggcgatgccggtgcaatgggcccgcctggg
gaaaagggcaagatggggatacctggtttaccaggatatccaggtagaatgggacagaag
ggttcactgggaccgtcaggtagaagagggagaaccggtctgaaggggtcaaggggtcat
ccaggtacgaacggtgaaccagggtcacagggatcaccggggccgaggggacagcgaggt
gctagaggtcaaaggggtacgcgtggacccaagggttctgaaggccaagaaggaccagag
ggacaacaaggagaaaggggatttgaaggaaaacaaggacctcagggtcctcccggtgta
attgggccacagggtccgagtggcgagagaggtccccttggtgaacgtggtgtgcctggg
tcgccaggaccttctggagaacctgggttacctggagaggctggtaaagaaggacttccg
ggtccaccaggaccagttggtccagaaggcaaaatcggaccaccaggaattcagggattt
ccaggagataggggaatgccgggagctgagggaccaatcggtttgaagggtgacatggga
ccgtctggtccaccggggcctcagggatcatctggaccacctggcccaccaggagaagcc
ggatccataggcctaccgggtcaacctggcccagttggttcaccaggccctgctggagac
aaaggctctattggagacgatggtccaccgggtcctgctgggagagatggtcaacctgga
atcaggggacttcctggtccacctggccctgaggggccacccggagaagaaggtgagact
ggtgaacctggtccgccaggaatgaaaggatctaaaggtgctcgaggattatctggtccc
gagggtccagcaggtgagaggggcccagaaggaatgccaggaccatcgggcgaacctggg
gagccgggtattcccggaccagtgggtccagctggacagaaaggaagtgatggatctcgg
ggtgctcctggacctcaaggacttcccggacaacagggcatgccagggacccccggttct
aaaggggaaatcggtgatgatggtccaaggggagtacaaggtgctgcgggacctccagga
aaacctggtgatcgtggtgcagagggggtaccaggaatggttgggcctcgtgggccggaa
ggagatcgtggagacaagggtaatcaaggtgaacaaggtcctaggggtttcccaggtgaa
cgtggtccaacgggttcaataggtgaaaagggtaaccagggagatgaaggagcccaaggt
caacctggggcgtatggcccaagaggagaacctggaaacgaaggtcccaaaggtcacagg
gggccatcgggaccaccgggaccaccaggctcatcaggagtacaaggaccacccggtaaa
gatggtacgaaaggagagcggggacagaggggagaaataggtcaaacgggtgcaccgggt
ccacaaggagatcttggtccacctggtccgaggggatcacctggtccgcctggcaccaat
ggacaggagggagagcagggtccaaagggtgagcgtggcgataaaggagaactgggcccg
caaggtatgccgggagcaactggaccaatgggacgacctggaccaactggagctgatggg
ccaaggggaccacctggacccgagggtgcacaaggtggggaagggccagctggacttcca
ggcttagctgggcctatgggaatgacgggagataaaggcgataaaggagagcagggagtg
aaagggaacaagggtgacaaaggcccaataggactcactggtcctaatggaccacttggc
gaaaaaggaagtcgtggtgaagttgggcaagaaggagatatgggaccaaaaggagaacct
ggtctcacaggtccacctggtccacttggtcctgatggtcccccaggtcttccgggtatt
gaaggcggcactggggacaaaggtgacaaaggtgacgtaggtccgaaaggagatctaggg
ttaactggacctgccggaccaccgggtcctccagcaacaatagaaaatctacaacagctg
gtggagatgggattactggatgctacgaggcagatgatgagggacgaggcagaacgacga
cgaagggcggcaggtgacgaaaacgatctacctccagagtacaccgatggattggaagaa
atctttggatcattggaggcacttaagattgaaatagaacaaatgaaaagaccaataggt
acgcggttcaaccctgcgaggacgtgtaaagatctttacatgtgtcacgaagactttcca
gatggcatgtactggatagatcctaatcaagggtgcagcaaagacgctattgaggtattt
tgtaatttcaccgcaggaggtgaaacctgcgtacagcctgacgagagcactggaaagctc
gtggcaggctccttcgatgaatccatactagatgatgtgaacgcctcggtgactcctaga
ggttatcgaaaggcacgccctggagattggttcagtgagtttaaacaaggagatctgatt
agctactctaatgtcggtgtagtgcagatgacattcctacggctactgagtgcttccgct
aaacagaatttcacatatacatgccaccactcagtgggttggtacgaccaagcatctgac
aactatgacaaagctgtcaagctgatgggtgctaacgaggaagagtttgcgtacgattcc
aattaccttcctactgtcataaaagatggatgcaagagcgcacctaagagaagcagcacc
gtatttgagatagaaacaacgaaactgcaccagctcccaattattgattttatgcccggg
gatttcggaaagcctgatcagcgatttggttatgaagctgggcctatctgttttaactaa

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (108)   
   KEGG ORTHOLOGY (1)   
   RefGene (104)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (118)   

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