KEGG   Serpula lacrymans: SERLADRAFT_444703
Entry
SERLADRAFT_444703 CDS       T03135                                 
Name
(RefSeq) ATP-dependent RNA helicase
  KO
K12599  antiviral helicase SKI2 [EC:5.6.2.6]
Organism
sla  Serpula lacrymans
Pathway
sla03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sla00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    SERLADRAFT_444703
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sla03019]
    SERLADRAFT_444703
Enzymes [BR:sla01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     SERLADRAFT_444703
Messenger RNA biogenesis [BR:sla03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     SERLADRAFT_444703
  mRNA degradation factors
   3'-5' decay
    Ski complex
     SERLADRAFT_444703
SSDB
Motif
Pfam: DSHCT Ski2_N DEAD MTR4_beta-barrel MTR4-like_stalk ResIII Helicase_C ATPase_2 HTH_Tnp_ISL3
Other DBs
NCBI-GeneID: 18816126
NCBI-ProteinID: XP_007313003
JGI: 444703
UniProt: F8NEX1
Position
Unknown
AA seq 1209 aa
MEESQDLLISQILQPSKGNSDDLLEKIGLGGIPSREQVYQEIEEKLLLPPSTLPENWLST
YQIHWQREVSVPSLLTYEPSPPPTSLTFVRSGLQGHVTGYAETPNPHVSTGLTSTSMDRA
PGPSKNFVRGKSGHVPFWPGGLEDVISSSGNSSIESAKGLRTVPPGFTRGLRLPGDDFED
EALAQFDEKINAEGIKESDMRTHLRPTKTTRRTRLATIIKRDWAHVVDINKPMTNFRELV
PEMAHEYPFELDTFQKEAVYHLEMGDSVFVAAHTSAGKTVVAEYAIALAEKHMTRAIYTS
PIKALSNQKFRDFKQTFSSSSVGILTGDVQINPEASCLVMTTEILRSMLYKGADLIRDVE
FVIFDEVHYVNDAERGVVWEEVIIMLPDHVNIILLSATVPNTKEFADWVGRTKKKDIYVI
STAQRPVPLEHYIYAGRETFKIVDANRRWISEGYKDAGEALKRKQDKAREAAGLPPVQRV
GARGAAPRGGQRGGTPTRGGQRGATPNNRGAPPGRGGGPSRIIHTGADKNLYVHLLNHLQ
KKTLLPVVVFTFSKKKCEENAGTLTNADLCTSVEKSEIHVAIEKALSRLKGTDKKLPQIS
RMRDLLSRGIGVHHGGILPIVKEVVEILFGRGLVKILFATETFAMGVNMPARCVVFSGIR
KHDGKSFRDILPGEYTQMAGRAGRRGLDPTGTVIIVVNDELPDQTSIQHMMLGTPAKLQS
QFRLTYNMILNLLRVEALRVEEMIKRSFSENASQKLLPDQQKEVVQHEKALSSLPKLQCE
VCLPDIEHYYDDTSTIVQHNGRLLAMVISNPSNSNMLASGRVAVLRDSHFRSNNVAILLK
ADLRQPSSFGRRFFALALVDQSTKSGEFDVDEQSVPPHWPPTPASLHAENATYEVRSVPL
ASIALVTSRIIKVDTTNIIDVHKKSDLLEATHSLKMLVQEWMSSGAIPEVDWGRIRTLEF
QETLQARNGLVKRQNSASCTLCIDFSEHYLLLHGQKILKKNISFLKLAISDQNLELIPDY
EQRIEVLKELNFIDDNSTIQLKGRVACEINSTNELVLTELILENTLANYDPEEVVALLSC
FVFQEKTDIDPIISPKLEQGRDAIVAILDRIGRVQDRHKVVVEEFRSNLKFGLTEVVYEW
AKGMPFEQITALTDVAEGTIVRVITRLDETCREVRDAARVIGDADLFKKMEEAQIKIKRD
IVFAASLYF
NT seq 3630 nt   +upstreamnt  +downstreamnt
atggaagagtcacaagatcttctgatcagccaaatactgcagccaagtaagggcaatagt
gatgacttgctagagaaaatcggactgggcggtataccgtctcgcgaacaagtatatcaa
gaaatcgaagaaaaattgctattacctcctagcactttacccgaaaactggctttcaact
taccagatacattggcaacgcgaagtttcagtcccttctttgttgacgtatgaaccttct
ccaccgccaacatctcttacattcgtccgttcagggctgcaaggtcatgtcaccggttat
gcagaaactcctaatccacatgtatccacaggtcttacttctacttcgatggaccgtgct
cctggccctagtaaaaacttcgtaagaggaaaatcgggtcacgtccctttctggccagga
ggtttggaagatgttatctcgagttcgggaaatagttctattgaatctgcaaaggggctg
aggactgtcccgcctggtttcactagaggcctccgtctacctggagacgattttgaagac
gaagcacttgcccaattcgatgaaaaaatcaatgcagagggcattaaagagagtgatatg
cgaacgcatctaagacccaccaaaactactcgacgaactagattagcaactattatcaag
cgagattgggctcatgttgttgatatcaataaaccgatgactaacttccgtgaactggtg
ccagagatggctcacgaatatccgttcgaactggataccttccagaaagaggcagtatac
catctggagatgggcgactctgtttttgtcgccgctcacacctccgctggaaaaactgta
gttgctgaatatgccattgccttggctgagaagcatatgacccgagcaatctatacatct
cctatcaaggcgctttccaatcagaagttccgagatttcaagcaaaccttttcctcttct
tcggttggtattctgaccggagacgtacagattaaccccgaagcaagttgtcttgtgatg
accacggaaattctgcgcagcatgctatacaaaggagctgatcttatccgcgatgttgaa
ttcgtcatctttgacgaagtgcactatgtcaatgatgcagagagaggcgtggtatgggaa
gaagtaatcatcatgcttcctgatcacgttaacatcattctattatctgcaaccgtccca
aacacaaaggaatttgccgattgggttggacgcactaaaaaaaaagatatatatgtaatc
tcaacagcacaacggcctgtgcctctggagcattatatttatgctggaagggaaacattc
aaaattgtagacgcaaatcgaagatggatttctgaagggtacaaagatgcaggagaggcc
ctgaaaaggaaacaggataaagcgcgcgaagctgctggattgccgccagtacagcgggtt
ggcgctcgtggtgcagccccacgaggtggccaaaggggagggacgccaaccagaggcgga
caaagaggtgctactccgaacaacaggggagcacctcctgggcgtggaggaggaccatca
cgtattattcatactggggctgacaagaatctatatgtgcatttgctcaatcatctacag
aagaagacactactacctgttgtggtcttcacgttctccaagaagaaatgtgaagaaaac
gcggggacgttaacgaacgcggatttatgtacatcggtcgagaaaagtgaaattcatgtc
gcgatagaaaaggcgctttctcgattaaaaggtacggacaaaaaattaccacaaataagt
cgaatgcgtgatctgctttctcgcggcattggggtgcaccatggaggaatattacccatt
gtaaaagaggttgttgagattttgttcggtcgtggactggtgaagatcttgtttgccaca
gaaactttcgctatgggagtaaacatgcctgcgcgatgtgtagttttttccggtattcgc
aaacatgatggaaagagcttcagagatattttgcctggagagtacacgcaaatggcgggc
cgtgcgggaaggcgtggtttggatcctacaggaacggttattatcgtcgttaacgatgaa
ctccccgatcaaacatcgattcaacatatgatgctcggtactccggcaaagcttcaatca
cagtttaggttaacgtacaacatgattctcaacttgcttcgcgttgaagctctcagggtt
gaagagatgatcaaacgcagcttctctgaaaacgcttctcagaagctcttacctgatcaa
caaaaagaagttgtacagcatgaaaaagctctatcatcattgcccaaacttcagtgtgaa
gtttgcttgcctgatatagagcactactatgacgacacctctaccatcgtacaacacaac
gggaggctcctagctatggtcatcagcaacccttcaaattcaaatatgctagcatcagga
agggtagctgtcctcagagattcgcatttcaggtcaaataacgtagcaattctactaaaa
gcagatctgcgacaaccttcgagttttggcagaaggttctttgcacttgctcttgtggac
cagagcaccaaaagtggcgagtttgacgtcgacgaacagtctgttccccctcactggccg
cctacgcctgcttctttacacgcagagaatgcaacgtatgaggttaggagcgtgcctcta
gctagcatagcccttgtgacaagccggattatcaaagttgacacaacgaacattatcgat
gtccataagaagtccgacctacttgaagccacgcattcgttgaagatgctcgttcaggag
tggatgtcctcaggggctatacctgaggtggactggggtcgtatacgcactttagaattt
caggagacattacaggcgagaaatggcttggtgaagcgtcaaaatagcgcatcatgcacc
ttatgcattgatttcagcgaacactaccttttgctccatggtcaaaagattttaaagaag
aatatctcatttttgaaactggcaatctctgaccagaatttggaacttattcccgattat
gagcaaagaattgaggtactgaaggagctgaattttattgacgataattcaacgatacag
cttaagggtcgagtggcttgcgagatcaattctacaaacgagctcgttctcacggagcta
attcttgaaaataccttagccaactacgaccctgaagaagtggtcgccttgttatcgtgt
tttgtattccaagagaagacagatattgacccgatcatttcgccaaagctagaacaagga
cgtgatgctatagttgccatactcgacagaataggtcgtgttcaggaccgtcacaaagtt
gttgtcgaagaattccggtccaatctaaagttcggcctaacggaagttgtttacgagtgg
gctaaagggatgccctttgaacaaatcacggctctgactgatgttgcggaaggtactatc
gttcgggtgataacgcgtctagacgaaacatgccgagaagtgcgagatgctgcccgtgtt
attggcgatgcagatctattcaagaagatggaagaagcacaaatcaaaattaagagagac
attgtatttgctgctagtttgtatttttag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (27)   
   KEGG ORTHOLOGY (1)   
   RefGene (22)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (9)   
   Pfam (9)   
All databases (44)   

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