KEGG   Sugiyamaella lignohabitans: AWJ20_3717
Entry
AWJ20_3717        CDS       T05270                                 
Symbol
POP2
Name
(RefSeq) CCR4-NOT core DEDD family RNase subunit POP2
  KO
K12581  CCR4-NOT transcription complex subunit 7/8
Organism
slb  Sugiyamaella lignohabitans
Pathway
slb03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:slb00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    AWJ20_3717 (POP2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:slb03019]
    AWJ20_3717 (POP2)
Messenger RNA biogenesis [BR:slb03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     AWJ20_3717 (POP2)
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     AWJ20_3717 (POP2)
SSDB
Motif
Pfam: CAF1
Other DBs
NCBI-GeneID: 30035769
NCBI-ProteinID: XP_018733400
UniProt: A0A161HUH4
Position
C:complement(40106..41998)
AA seq 630 aa
MMRASGNYNNRSNGPNAGLMSLQMLQGQGGQIQGQPQNQLQQQQQHQQQGVMPLQQQQYI
NAGAGYKQMLPDQRDDHGDDQQQMLQAQAQAQAQAQAQAQAQAHAHAQQAHVHQAQAHAH
AHAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQGQ
PNLMFQRMQARNQNINQMAAASLQAFGGVPNVGAGADIGVGAGGLGNGLMSSSTGGGPLS
NYNNTTDINAFNGSLPNLGLAGGMMNIANTGGAGGALGGPTGNLAAAGGLSAAAAGGSMK
SSTIVNVWKWNLEDQMAAIRDLVERYKYISVDCKFPGIVARPIGTFKSTSEYHYQTLRSN
VDILQVIQIGLTFADEYGNHPVGVASTFQFNFKFNVNEDMCSADGVELLRQSGIDFAKHE
TDGIDPFAFGELILTSGLTLDDTVSWITFHSGYDLGYILSIMLNNEVPVEERGFLSTLRT
YFPNVWDVKCITKTFKLSNKSQLSEVADDFQVRRLPMPQSSVNGGLSSLGGLSQAGNDAF
VTSGCFFEIKRLIGDANINKVRNYLFGLGDGFEDDPSQQSNNGTNNAAAAASAAILNAIS
GGATASASASHGVTNAANIFQFGKMGGGAL
NT seq 1893 nt   +upstreamnt  +downstreamnt
atgatgagagcatctggcaattataacaatcgatctaatggtccgaatgctggattgatg
tcgttacaaatgttacagggccagggaggccagattcagggtcaaccacagaatcagttg
caacaacaacaacaacaccagcaacagggagtaatgccgcttcagcagcaacagtatata
aacgcgggtgctggatacaaacagatgcttccagatcagagagatgaccatggggatgac
caacaacagatgctgcaggctcaagcgcaagctcaagcacaggctcaggctcaagctcaa
gctcaggcccatgctcatgcccaacaggctcatgttcaccaggctcaagctcatgctcat
gcccatgctcaggctcaagctcaagctcaagctcaagcacaagcacaggcacaggcacaa
gcacaggctcaggctcaggctcaagctcaagcacaggctcaagcacaagcacaggctcag
gctcaagcacaagcacaggcacaggcacaagctcaagctcaagcacaagctcagggtcaa
ccaaatctcatgtttcaaagaatgcaagcccgaaatcagaatattaaccaaatggctgct
gccagtttacaagcatttggaggagttccaaatgttggagctggcgccgatattggtgtt
ggagcaggtggtttaggaaacggtcttatgagcagttccacaggcgggggtccactgtca
aattacaacaacacaacagatataaacgcattcaatggatcactgcccaatctaggactg
gccggaggaatgatgaatatagctaatacaggtggtgctggaggtgcacttggaggacca
actggcaacttagcagcagcaggtggattatccgctgcagctgctggtggctcgatgaaa
tcgtcgacaattgtcaatgtgtggaaatggaatttagaagatcaaatggctgcaattcga
gatctcgtcgaacgatacaaatacatatcagtggattgtaaatttcctggtattgtagca
agacctattggcacgtttaaatcaacgtcagaataccactaccaaactctgcggtctaat
gtagatattttacaggtgattcagatcggactgacttttgctgatgaatacggtaatcat
cctgtgggagttgcatcgactttccagtttaatttcaagttcaatgtcaacgaagatatg
tgttctgccgacggagtcgagctgttacggcagtcgggcattgactttgccaaacacgaa
acagacggaatagacccatttgcatttggcgagttgattctgacgtcaggactcaccctt
gacgacaccgtcagctggatcacttttcacagcggttatgatctgggatacattctatct
atcatgctaaataacgaagtccctgttgaagaaagaggtttcttatctactttaaggaca
tacttccccaatgtttgggacgtgaaatgcataaccaaaacattcaagctatcaaacaag
tctcaactgtcagaagttgctgacgatttccaagtaagaagacttcccatgccacaatca
tcagtcaacggaggactgtcgtctcttggagggctcagtcaagctggcaacgacgcattt
gtgaccagcggctgtttctttgaaatcaaacgtctgataggcgatgccaacatcaacaaa
gtacggaactacctcttcggactgggagacggtttcgaagacgacccgtcccaacagtct
aacaacggcaccaacaacgcagcggccgcagcctccgcagctatcctcaacgccatctct
ggtggtgccacggcctctgcctctgccagccacggcgtcaccaacgccgccaacatcttc
cagttcggcaaaatgggcggtggtgctctgtaa

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (12)   
   KEGG ORTHOLOGY (1)   
   RefGene (8)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (20)   

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