KEGG   Solanum lycopersicum (tomato): 101245117
Entry
101245117         CDS       T02665                                 
Name
(RefSeq) ras-related protein RABF1
  KO
K07889  Ras-related protein Rab-5C
Organism
sly  Solanum lycopersicum (tomato)
Pathway
sly04144  Endocytosis
sly04145  Phagosome
sly04148  Efferocytosis
Brite
KEGG Orthology (KO) [BR:sly00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    101245117
   04145 Phagosome
    101245117
   04148 Efferocytosis
    101245117
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:sly04131]
    101245117
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:sly04147]
    101245117
   04031 GTP-binding proteins [BR:sly04031]
    101245117
Membrane trafficking [BR:sly04131]
 Endocytosis
  Rab GTPases and associated proteins
   Rab GTPases
    101245117
 Endosome - Lysosome transport
    101245117
Exosome [BR:sly04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   101245117
  Exosomal proteins of other body fluids (saliva and urine)
   101245117
  Exosomal proteins of colorectal cancer cells
   101245117
  Exosomal proteins of bladder cancer cells
   101245117
GTP-binding proteins [BR:sly04031]
 Small (monomeric) G-proteins
  Rab Family
   Rab5/17/22/31 [OT]
    101245117
SSDB
Motif
Pfam: Ras Roc Arf RsgA_GTPase Gtr1_RagA GTP_EFTU MMR_HSR1 AAA_7 AAA_16 TniB
Other DBs
NCBI-GeneID: 101245117
NCBI-ProteinID: NP_001333207
UniProt: A0A3Q7IQD2
Position
11:complement(2614165..2621224)
AA seq 200 aa
MGCASSAADRNSGRAAGLNPDNGGAYDPKNLKVKLVLLGDSGVGKSCIVLRFVRGQFDPT
SKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPES
FAKAQYWVKELQKHGSPDIVMALVGNKADLDEKREVTTQDGIDCAEKNGMFFIETSAKTA
DNINQLFEEIAKRLPRPTVA
NT seq 603 nt   +upstreamnt  +downstreamnt
atgggttgtgcatcttcagctgcagataggaattcgggacgggctgctggacttaatcct
gataatggtggagcatatgaccctaagaatcttaaagtgaagctggtactcttgggtgat
tctggtgttggtaaaagttgtattgttctgcgctttgtacgtggtcaatttgatccgaca
tctaaggtgactgtaggagcttcttttctgtctcaaacaatagccttgcaggactcaact
acagttaaatttgaaatatgggacacagctggtcaagaaaggtatgcagctcttgcacca
ttatactaccgaggtgctgcagttgcagtggttgtgtatgatataactagtcctgagtct
tttgccaaagcacaatactgggtcaaggaactgcaaaaacacgggagccctgatatagtc
atggctctggttggcaacaaagccgatctcgacgagaaaagagaagtaacgacacaagat
ggaattgactgtgctgaaaagaatggcatgttctttatagaaacatctgctaagacagct
gataatatcaaccagctgtttgaggaaatcgcgaagagattgccacgccctactgttgct
tga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (9)   
   KEGG ORTHOLOGY (1)   
   RefGene (4)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   PGDBJ (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (7)   
   RefSeq(nuc) (1)   
   GenBank (3)   
   EMBL (3)   
Protein domain (10)   
   Pfam (10)   
All databases (36)   

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