KEGG   Solanum lycopersicum (tomato): 101265516
Entry
101265516         CDS       T02665                                 
Name
(RefSeq) CCR4-NOT transcription complex subunit 9
  KO
K12606  CCR4-NOT transcription complex subunit 9
Organism
sly  Solanum lycopersicum (tomato)
Pathway
sly03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sly00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    101265516
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sly03019]
    101265516
Messenger RNA biogenesis [BR:sly03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     101265516
SSDB
Motif
Pfam: Rcd1 DUF2249
Other DBs
NCBI-GeneID: 101265516
NCBI-ProteinID: XP_010314088
Position
12:5301653..5310764
AA seq 318 aa
ILIDRGAFRQYIYLTVHISAGRRTNFSIGRSRRKKMQSAEQLVLELSNPDLRENALLELS
KKRELFQDLAPLLWNSFGTVAALLQEIVSIYPVLSPPNLTPAQSNRVCNALALLQCVASH
PDTRMLFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTEI
IPLCLRTMEMGSELSKTVATFIVQKILLDDVGLDYICTTAERFFAVGRVLGNMVGALAEQ
PSSRLLKHIIRCYLRLSDNPRACDALRNGLPDMLRDNTFSTCLRDDPTTRRWLQQLINNV
NGARVALQAGGFDHMLMN
NT seq 957 nt   +upstreamnt  +downstreamnt
atattgatagatagaggggcatttaggcaatatatctatctcacagtacatatatctgct
ggtcggagaaccaatttcagtattgggaggagtcgccggaaaaaaatgcagtcagcagag
cagcttgtgcttgaactaagcaatcccgatcttagagaaaatgctcttcttgaactctct
aagaagagggaattattccaggatttagcgccattactatggaactcatttggtacagtt
gctgcgctcttacaggagatagtttccatctaccctgttttatcaccgccaaacttgact
ccagcacaatcgaacagagtttgcaatgctttagcacttcttcagtgtgtagcctctcac
cctgacacgagaatgttgtttctcaatgcacatattccgttgtacttgtacccttttctg
aatacaacaagcaaatcaagaccttttgaatatctgaggcttactagcttaggtgtcatt
ggtgcccttgtgaaggttgatgatactgaagttatcagttttctactatcaactgaaata
attcccctgtgcctgcgcacaatggagatgggcagtgaactgtcaaaaacggttgcaact
ttcattgtgcaaaaaatacttctagatgatgttggtttggattacatatgtaccacagca
gaaagattttttgcagttgggcgagtattggggaatatggttggcgcacttgctgaacag
ccttcgtcaaggttactgaagcacataattaggtgctatcttcgcttgtcggacaatcca
agggcatgtgatgcactaagaaatggtctccctgatatgcttagagacaacaccttcagt
acctgtcttcgtgacgaccctacaactaggaggtggctacaacaattgatcaacaatgtt
aatggtgcccgtgttgctctacaggcaggtggatttgatcatatgctgatgaactaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (7)   
   KEGG ORTHOLOGY (1)   
   RefGene (2)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   PGDBJ (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (2)   
   Pfam (2)   
All databases (19)   

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