KEGG   Serratia sp. FGI94: D781_0404
Entry
D781_0404         CDS       T02433                                 
Name
(GenBank) DNA/RNA helicase, superfamily II
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
Organism
smaf  Serratia sp. FGI94
Pathway
smaf03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:smaf00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    D781_0404
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:smaf03019]
    D781_0404
   03009 Ribosome biogenesis [BR:smaf03009]
    D781_0404
Enzymes [BR:smaf01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     D781_0404
Messenger RNA biogenesis [BR:smaf03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     D781_0404
Ribosome biogenesis [BR:smaf03009]
 Prokaryotic type
  rRNA helicases
   D781_0404
SSDB
Motif
Pfam: DEAD Helicase_C DbpA DeaD_C ResIII CMS1 DRTGG UTP25
Other DBs
NCBI-ProteinID: AGB80764
UniProt: L0M9Z6
Position
434821..436677
AA seq 618 aa
MTVELETSFADLGLSAPIISALNDLGYVKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAA
FSLPLLHNIDASLKAPQILVLAPTRELAVQVAEAMTDFSKHMNGVNVVALYGGQRYDVQL
RALRQGPQIVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAEIPA
EHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSINTRPDISQSYWTAYGMRKNEALVRF
LEAEDFDAAIIFVRTKNATLEVAEALERNGYSSAALNGDMNQALREQTLERLKDGRLDIL
IATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRN
IERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDMYRALLAKLQPEEELDME
TLAAALLKMAQGERPLILPPDPVFKPRKPREFNDRDDRRGDRRDGDRPRRERRDVGEMQL
YRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGSHSTIELPKGMPGEILNHFTRT
RILNKPMNMQLLGDAQPHERRERRDGGNRRPFNGERREGGPRRSFGERREGGNAAGNGER
RGGNASRERAPRRRFGDA
NT seq 1857 nt   +upstreamnt  +downstreamnt
atgactgttgagcttgaaacctcttttgctgacctggggctgtctgctccgatcatttct
gctctgaacgacctgggctatgttaagccatcacctattcaggctgagtgtattcctcac
ctgttgaacggccgcgatgtgctgggtatggcacaaaccggcagcggcaagactgcggcg
ttctcgctgccgctgctgcacaatatcgacgcttccctgaaggcgccacaaatcctggtg
ttggcgccaacccgcgaactggcggtgcaggttgctgaagcgatgaccgatttctccaaa
cacatgaacggcgtaaacgttgtggccctgtacggcggccagcgttacgacgtacagctg
cgcgccctgcgtcaaggcccgcaaatcgtggtgggtacgccaggccgtctgctggatcac
ctgaaacgcggcaccctgaacctctccaacctgagcggtctggtactggatgaagccgac
gaaatgctgcgtatgggctttatcgaagacgttgaaaccatcatggcggaaatcccggct
gaacatcagaccgcgctgttctccgccaccatgccggaagcgattcgccgcatcacccgc
cgctttatgaaagagccgcaggaagtgcgcattcagtccagcatcaacacccgtccggac
atcagccagagctactggacagcgtacggcatgcgtaaaaacgaagcgctggtgcgtttc
ctggaagcggaagactttgatgcggcgattatcttcgtgcgcaccaaaaacgccacgctg
gaagtggcggaagcgctggagcgtaacggctacagcagcgccgcgctgaacggcgacatg
aaccaggcgctgcgtgagcagaccctggagcgcctgaaagacggccgcctggacatcctg
atcgccaccgacgtggcggcgcgtggtctggacgttgagcgtatcagcctggtggttaac
tacgacatcccgatggacgcagaatcttacgttcaccgtatcggtcgtaccggccgcgcc
ggccgtgccggtcgcgcgctgctgttcgtggaaaaccgcgaacgccgcctgctgcgcaac
atcgagcgcaccatgaagctgaccattccggaagtagaactgccgaacgcagaactgctg
ggcaaacgccgtctggaaaaattcgccgctaaagttcagcagcagctggaaagcagcgat
ctggatatgtaccgtgcactgctggctaaactgcagccggaagaagagctggacatggaa
acgctggccgccgcgctgctgaaaatggcgcagggcgaacgtccgctgatcctgccgccg
gatccggtcttcaagccgcgtaaaccacgtgagttcaacgatcgtgacgaccgccgcggc
gaccgtcgtgacggcgaccgtccgcgtcgtgaacgtcgtgacgttggtgaaatgcagctg
taccgcattgaagtgggccgtgatgacggcgtggaagtgcgtcatatcgtgggcgctatc
gccaacgaaggcgacatcagcagccgttacatcggtaatatcaagctgtttggctcccac
tccaccatcgagctgccaaaaggcatgccgggcgagatcctgaatcacttcactcgcacc
cgcattctgaacaagccgatgaacatgcagctgctgggcgatgcacagccgcacgagcgc
cgcgaacgtcgcgacggcggcaaccgtcgtccgttcaacggtgagcgccgtgaaggcggc
ccacgtcgttctttcggtgaacgtcgtgaaggcggcaacgcagccggcaacggcgagcgt
cgtggcggcaacgccagccgcgagcgcgcaccacgtcgtcgtttcggcgatgcataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (19)   

Download RDF
DBGET integrated database retrieval system