KEGG T03592: SM39

Serratia marcescens SM39: SM39_2866

Entry

SM39_2866         CDS       T03592

Symbol

gyrA

Name

(GenBank) DNA gyrase type II topoisomerase, subunit A

K02469

DNA gyrase subunit A [EC:5.6.2.2]

Organism

smar Serratia marcescens SM39

Brite

KEGG Orthology (KO) [BR:smar00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:smar03032]
    SM39_2866 (gyrA)
   03400 DNA repair and recombination proteins [BR:smar03400]
    SM39_2866 (gyrA)
Enzymes [BR:smar01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.2  DNA topoisomerase (ATP-hydrolysing)
     SM39_2866 (gyrA)
DNA replication proteins [BR:smar03032]
Prokaryotic type
  DNA Topoisomerases
   SM39_2866 (gyrA)
DNA repair and recombination proteins [BR:smar03400]
Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      SM39_2866 (gyrA)

SSDB

Motif

Pfam:

DNA_topoisoIV DNA_gyraseA_C

Other DBs

NCBI-ProteinID:

BAO34847

Position

complement(2930584..2933226)

AA seq 880 aa
MSDLAREITPVNIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWN
KPYKKSARVVGDVIGKYHPHGDRAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAM
RYTEVRMSKIAHELLADLEKETVDFVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMAT
NIPPHNLAEVVNGCLAYIDDENISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKV
YLRARAEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG
MRIVIEVKRDAVGEVVLNNLYALTQLQVTFGINMVALHQGQPKLLNLKDILEAFVRHRRE
VVTRRTIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKVALVAQPWDLGNV
SAMLERAGDDAARPEWLEPEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKE
LLNFIAELIFILESPERLMEVIREELVAVKELYNDGRRTEITANTSDINIEDLINQEDVV
VTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLY
WMKVYQLPEASRGARGRPIVNLLPLEADERITAILPVREYEEGRHVFMATASGTVKKTAL
TEFSRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSANGKVVRFPETQVRSMGRTATG
VRGINLGEGDSVISLIVPRGEGDILTVTQNGFGKRTAVTEYPTKSRATQGVISIKVSERN
GQVVGAVQVETSDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDENVVGLQRVA
EPVEDEELDSLEPGAEVVEEDTTPLDDGDDAAEPMDDDNV

NT seq 2643 nt +upstreamnt +downstreamnt
atgagcgaccttgccagagaaatcacaccggtaaacatcgaagacgagttgaaaaactcg
tatctggactatgcgatgtccgttattgtcggacgtgcgctgccagatgttcgtgatgga
ctgaagccggttcaccgccgcgttctgtacgcgatgagcgtattgggtaacgactggaat
aaaccatacaagaaatcggcccgtgtcgtcggggacgtgatcggtaaatatcacccgcac
ggtgacagagcggtttacgacactatcgtgcgtatggctcagccgttttcactgcgctac
atgctggtggacggtcagggtaacttcggctccgtcgacggcgactccgccgcggcgatg
cgttataccgaagtgcgcatgtccaagattgctcacgaactgttggcggatctggaaaaa
gaaaccgtcgacttcgtgcctaactatgatggcaccgagcagatcccggccgtcatgccg
accaagatcccgaacctgctggtcaacggttcgtcgggcatcgccgtgggcatggccacc
aatatcccgccgcacaacctggcggaagtcgtcaacggctgcctggcctatatcgacgat
gaaaacatcagcatcgaagggctgatggaacacatcccggggccggacttcccgacggcg
gcgatcatcaacggccgtcgcggcattgaagaggcctaccgcaccgggcgcggcaaagtc
tacctgcgcgcgcgcgcggaagtggaagccgacgccaagaccgggcgcgaaaccatcatc
gttcacgagatcccgtatcaggtgaacaaggcgcgtctgatcgagaagatcgccgagctg
gtgaaagaaaagcgcgtggaaggcatcagcgcgctgcgcgacgagtccgataaagacggc
atgcgcatcgtgatcgaagtcaaacgcgacgcggtcggcgaagtggtgctgaacaacctg
tatgcgctgacgcaactgcaggtcactttcggcatcaacatggtcgcgctgcatcagggc
cagcctaagctgctgaacctgaaagacatcctcgaagccttcgtgcgtcaccgccgcgaa
gtggttacgcgccgcaccatcttcgaactgcgcaaggcccgcgaccgcgcccatatcctg
gaagcgctggctatcgcactggccaacatcgatccgatcatcgagctgattcgccgtgcg
ccgaccccggccgaagcgaaagtcgcgctggtggcgcagccgtgggatctgggcaacgtc
agcgccatgctggagcgcgccggtgacgacgccgcccgccctgagtggctggagccggag
ttcggcatccgcgacggcaaatactacctgaccgagcagcaggctcaggcgattctggat
ctgcgcctgcagaaactgaccggcctggagcacgagaagctgctggacgaatataaagag
ctgctcaactttatcgccgagctgatctttatcctggaaagcccagagcgcctgatggaa
gtgatccgcgaagagctggtggcagtcaaagagctgtacaacgacggccgccgcaccgag
atcaccgccaatacttccgacatcaacatcgaagacctgatcaatcaggaagacgtggtg
gtgaccctgtctcaccagggctacgtgaagtatcagccgctgtccgactatgaagcgcag
cgccgcggcggcaaaggcaagtctgcggcgcgtatcaaagaagaagactttatcgatcgt
ctgctggtggccaacacccacgatacgatcctgtgcttctccagccgtggccgcctgtac
tggatgaaggtgtaccaactgcctgaagccagccgcggcgcgcgcggtcgcccaatcgtc
aacctgctgccgctggaagccgatgagcgtatcaccgccattctgccggtgcgcgagtat
gaagaagggcgccacgtgttcatggccaccgccagcggtaccgtgaagaaaactgcgttg
accgagttcagccgcccacgcagcgccggcatcatcgccgtcaacctcaacgagggtgac
gagctgatcggtgtcgatctgaccgacggcagcaacgaagtgatgctgttctccgccaac
ggtaaagtggtgcgcttcccggaaacgcaggtacgttcgatgggccgtaccgcgaccggc
gtgcgcggcatcaacctcggcgaaggcgacagcgtgatctcgctgattgtgccgcgcggc
gaaggcgacatcctgaccgttacgcaaaacggcttcggtaaacgtaccgcggtgaccgag
tacccgaccaagtcgcgcgccacccagggggttatctccatcaaggtgagcgagcgtaac
ggccaggtggtcggcgccgtgcaggtggaaaccagcgaccagatcatgatgatcaccgat
gccggcacgctggtgcgtacccgcgtttcggaagtcagcgtggtgggccgtaacacccag
ggcgtgacgctgatccgcacggcggaagacgaaaacgtcgtcggtctgcagcgcgtggcc
gagccggtggaagacgaagagctggacagcctggagccgggcgcggaagtggtggaagaa
gacaccacgccgctggacgatggcgacgacgcggctgagccgatggatgacgacaacgtt
taa

All links

Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (2)   
   Pfam (2)   
All databases (11)   

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