KEGG   Serratia marcescens SM39: SM39_3373
Entry
SM39_3373         CDS       T03592                                 
Symbol
dnaE
Name
(GenBank) DNA polymerase III, alpha subunit
  KO
K02337  DNA polymerase III subunit alpha [EC:2.7.7.7]
Organism
smar  Serratia marcescens SM39
Pathway
smar03030  DNA replication
smar03430  Mismatch repair
smar03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:smar00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    SM39_3373 (dnaE)
   03430 Mismatch repair
    SM39_3373 (dnaE)
   03440 Homologous recombination
    SM39_3373 (dnaE)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:smar03032]
    SM39_3373 (dnaE)
   03400 DNA repair and recombination proteins [BR:smar03400]
    SM39_3373 (dnaE)
Enzymes [BR:smar01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     SM39_3373 (dnaE)
DNA replication proteins [BR:smar03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     SM39_3373 (dnaE)
DNA repair and recombination proteins [BR:smar03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     SM39_3373 (dnaE)
SSDB
Motif
Pfam: DNA_pol3_alpha DNA_pol3_finger PHP DNA_pol_IIIA_C HHH_6 tRNA_anti-codon
Other DBs
NCBI-ProteinID: BAO35337
Position
complement(3471634..3475122)
AA seq 1162 aa
MAEPRFIHLRVHSDYSMIDGLAKTAPLVKRAAALAMPALAITDFTNLCGLVKFYGSAHGA
GIKPIIGADFHVQSEELGDELAQLTVLASNNEGYQNLTLLISRAYQRGYGAAGPMIDRDW
LIEHREGLILLSGARQGDVGKFLLRGNQAQVDQCLDFYQQHFPDCYYLELIRTGRPDEEN
YLHAAVALATERGLPVVATNDVRFLVEDDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYM
RSEDEMCELFADIPEALLNSVEIAKRCNVTIRLGEYFLPQFPTGDMSTEDFLVLKSKEGL
EERLEFLFPDPEVRAQRRPEYDERLDVELKVINQMGFPGYFLIVMEFIQWSKDNNVPVGP
GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAE
MYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLEKAFAAEPQ
LPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDAEGQHPVTQ
FDKNDVEYAGLVKFDFLGLRTLTIIDWALEMINARRAKTGLEPIDIAAIPLDDKKSFDML
QRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREE
ISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKNPVEM
AKQRGGFEDGAKARGIDGELSVKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPA
EFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKG
VGEGPIEAIIEARNSGEQGYFKDLFDLCARSDIKKLNRRILEKLIMSGAFDRLGPHRAAL
MNSLGDALKAADQHAKAEAIGQVDMFGVLAEAPEQVEQSYANIAPWPEQVVLDGERETLG
LYLTGHPITQYLKEIERYAGGQRLKDMYPTDRGKMTTAVGLVVAARVMVTKRGNRIGICT
LDDRSGRLEVMLFTEALEKYQHLLEKDRILIASGQVSFDDFSGGLKMMAREVMDISEARE
KYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQREDARAKLRFGATWRVTP
TDRLLIDLRTLVGNEQVDLEFD
NT seq 3489 nt   +upstreamnt  +downstreamnt
atggccgaacctcgttttattcacctgcgcgtccacagtgactactccatgattgatgga
ttggccaagacggcaccgctggtgaaaagagccgccgcgttagccatgcctgctctggca
atcaccgatttcaccaacctgtgtggattggtgaagttctacggcagcgcgcacggcgcc
gggatcaaaccgatcatcggcgcggatttccatgtgcaaagcgaagagctgggcgacgag
ctggctcagctgacggtgctggccagcaacaacgaaggctaccagaacctgacgctgctg
atttcccgcgcctatcagcgcggctacggcgccgccggcccgatgatcgatcgcgactgg
ctgattgaacatcgcgaagggctgattctgctctccggcgcgcgtcagggcgacgtcggc
aagtttctgctgcgcggcaaccaggcgcaggtggatcagtgtctggacttctaccagcag
cacttcccggactgttactacctggaactgattcgcaccggccgcccggacgaagagaac
tacctgcatgcggcagtggcgctcgccaccgagcgcggtttgccggtggtggccaccaac
gacgtgcgcttcctggtggaagatgacttcgacgcccatgaaattcgcgtcgccatccac
gacggctttacgctggacgatcccaagcggccgcgcaactacagcccgcagcaatacatg
cgcagcgaagacgagatgtgcgaactgttcgccgacatccccgaagcgctgctgaacagc
gtcgagatcgccaagcgctgcaacgtcaccattcgcctcggcgaatacttcctgccgcag
ttcccgaccggcgacatgagcaccgaggacttcctggtactcaaatcgaaagaggggctg
gaagagcgtctcgagttcctgttccccgatcctgaagtgcgcgcgcagcgccgcccggaa
tacgacgagcgtctggacgtcgagctgaaggtgatcaaccagatggggttccccggctac
ttcctgatcgtgatggagtttatccagtggtcgaaggacaacaacgtgccggtgggcccg
gggcgcggttccggcgccggttcgctggtggcctatgcgttgaaaatcaccgacctcgat
ccgctggagttcgacctgctgttcgaacgtttcctgaacccggaacgtgtctcgatgccc
gacttcgacgtcgacttctgcatggagaagcgcgaccaggtaattgagcacgtggcggag
atgtacggccgcgaagcggtatcgcagatcatcaccttcggcaccatggcggcgaaagcg
gttatccgcgacgtgggccgcgtgctggggcacccgtacggcttcgtcgatcgcatctcc
aagctggtgccgccggatccgggcatgacgctggaaaaagccttcgctgccgaaccgcag
ctgccggaaatttacgaggcagacgaagaggtcaaggcgctgatcgacatggcgcgcaag
ctggaaggggtgacgcgcaacgccggtaaacacgccgggggcgtggtgatagcgccgacc
aaaatcaccgacttcgcgccgctgtactgcgacgccgaagggcagcacccggtgacccag
ttcgataagaacgacgtggaatacgccgggctggtgaagttcgacttcctcggtctgcgc
accctgaccatcatcgactgggcgctggagatgatcaacgcccggcgcgccaaaaccggg
ctagagccgatcgacatcgccgccattccgctcgacgacaagaaaagcttcgatatgctg
cagcgctcggaaaccacggcggtgttccagcttgaatcgcgcggcatgaaagacctgatc
aaacgtctgaagcccgactgcttcgaagacatgatcgcactggtggcgctgttccgtccg
gggccgctgcagtcggggatggtggataacttcatcgaccgcaagcacggccgcgaagag
atctcctacccggacatccagtggcagcacgagtcgctcaagccggtgctggaacccacc
tatggcatcatcctgtatcaggaacaggtgatgcagattgcccaggtgctggcgggctat
acgctgggcggcgcggacatgctgcgccgtgcgatgggtaaaaagaacccggtcgaaatg
gctaagcagcgcggcggctttgaagatggcgccaaagcgcgcggcatcgacggcgaactg
tcggtgaaaatcttcgacctggtggagaaattcgccggatacggcttcaacaaatcgcac
tccgccgcctatgcgctggtgtcgtatcagacgctgtggctgaaagcgcactacccggcc
gagtttatggcggcggtgatgaccgccgatatggacaacaccgataaggtggtggggctg
gtggacgaatgctggcgcatggggctgaagatcctgccgccggacatcaacagcggcctg
tatcacttccacgtcaacgacgacggcgagatcgtttacggcatcggcgccatcaagggc
gtgggggaagggccgatcgaagccatcatcgaggcgcgcaacagcggcgagcagggttac
ttcaaagacctgttcgatctctgcgcgcgctcagacatcaagaaactgaaccgccgcatt
ctggaaaaactgatcatgtccggcgcgttcgatcgcctcgggccgcaccgcgccgcgctg
atgaattcgctcggcgacgcgttgaaagcggcggatcagcatgcgaaagccgaagcgatc
ggccaggtggatatgtttggcgtgctggcggaagcgccggagcaggtggagcaatcctac
gccaatatcgcgccctggccggagcaggtggtgctggacggggaacgggagacgctgggg
ctgtacctgaccggccacccgatcacccagtacctgaaggagatcgaacgttacgccggt
ggccagcgtttgaaagacatgtacccgacggatcggggcaaaatgaccaccgccgtcggg
ctggtggtcgccgcgcgggtgatggtgaccaagcgcggcaaccgcatcggcatctgtaca
ttggatgaccgttcgggccgcctggaagtgatgttattcaccgaagcgttagaaaaatac
cagcatttgttggaaaaagaccgtatccttatcgccagtggacaggtcagctttgatgac
tttagcggcgggcttaaaatgatggcccgcgaggtaatggacatcagtgaagcccgggaa
aaatacgctcgcgggcttgctatctcgctgactgacaggcaaattgatgaccagcttttg
aaccgtctccgtcagtcgttggaaccccatcgctcggggacgattccagtgcatctctac
tatcaacgggaagatgcgcgagccaagctgcgttttggcgcaacctggcgcgtgacgccc
accgaccgcttgttgatcgacttgcggacgttggtaggcaatgagcaggtggacttggaa
tttgactaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (6)   
   Pfam (6)   
All databases (18)   

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