KEGG   Shewanella marisflavi: CFF01_00240
Entry
CFF01_00240       CDS       T05400                                 
Name
(GenBank) 3'-5' exonuclease
  KO
K02342  DNA polymerase III subunit epsilon [EC:2.7.7.7]
Organism
smav  Shewanella marisflavi
Pathway
smav03030  DNA replication
smav03430  Mismatch repair
smav03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:smav00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    CFF01_00240
   03430 Mismatch repair
    CFF01_00240
   03440 Homologous recombination
    CFF01_00240
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:smav03032]
    CFF01_00240
   03400 DNA repair and recombination proteins [BR:smav03400]
    CFF01_00240
Enzymes [BR:smav01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     CFF01_00240
DNA replication proteins [BR:smav03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     CFF01_00240
DNA repair and recombination proteins [BR:smav03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     CFF01_00240
SSDB
Motif
Pfam: RNase_T RNase_H_2
Other DBs
NCBI-ProteinID: ASJ95142
UniProt: A0A4Y6IWH0
Position
complement(57442..58161)
AA seq 239 aa
MLKKLLSPPSIDWLGKFEQKLKTTQHSGLLQYYSTPLPDPHTPLSEIEFLAMDFETTGLN
PDKDDIVSIGTVPFTLRRIFLNRAQHWTVRPRDNLADESVIIHGITHSDILDAPDLSAIF
EQVLQQMAGKIMVVHCQAIERQFFERALQRRIHQGIEFPVIDTMALESRIQQLNHGGLWR
RLKGEKPGSVRLGLSRLRYGLPSYPPHHALTDAIASAELLQAQIAHHFDPNRPIKDFWC
NT seq 720 nt   +upstreamnt  +downstreamnt
atgctgaagaagctattgtcgcccccaagcatcgactggctgggcaagtttgaacagaag
cttaagaccactcagcacagtgggctgctgcagtactatagtacgccattgcccgaccct
catacgccgctgtctgagatcgagtttcttgccatggattttgaaaccacaggccttaac
cccgacaaagacgatattgtcagcataggcacagtgcctttcaccttaagacggattttt
ctcaatcgcgcccaacactggaccgtaagacctagggacaacctggccgatgagtcggtg
atcatccatggtatcacccacagcgacattctcgatgcaccggatctctccgccatcttc
gagcaggtactgcagcagatggcgggtaagataatggtcgtgcattgccaagcgatcgaa
cggcagtttttcgaacgtgccctgcagcggcgaattcaccaaggaatagagtttccggta
atagataccatggcgctggaatctcgcattcagcagctaaaccatggcggtctgtggcga
cgactcaagggtgagaaacccggttcggtaaggctcggactgagcagattgcgttatggc
ttacccagctatcctccccaccatgccctcaccgatgccatcgccagcgccgaactatta
caggcacagatcgcccatcatttcgatcccaaccgtcccatcaaagacttttggtgctag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (15)   

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