KEGG T00058: SMc03177

Sinorhizobium meliloti 1021: SMc03177

Entry

SMc03177 CDS T00058

Definition

ATP-dependent DNA ligase (EC:6.5.1.1)

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

sme Sinorhizobium meliloti 1021

Pathway

sme03410	Base excision repair
sme03420	Nucleotide excision repair
sme03430	Mismatch repair
sme03450	Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:sme03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:sme03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:sme03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:sme03450]

SSDB

Motif

Pfam:

DNA_ligase_A_M DNA_ligase_A_C DNA_ligase_A_N Se-cys_synth_N

Other DBs

NCBI-GI:

NCBI-GeneID:

RhizoBase:

UniProt:

Position

3139187..3140800

AA seq 537 aa
MKAFAELLDRLVLTPQRNAKIRLLVDYFRGAPDPSRGYALAAIAGTLSLNTVKPALIRDL
LLERMDDVLFHYSYDYVGDLAETVSLAWEPPPDVALQDIPLGEVVERLQRAGRSEVRSLV
RDFLDRLDTSGRFALLKLATGGLRIGVSARLAKQALAEMGGKEVSEIETLWHGLEPPYLP
LFLWLTGEAEMPVLKTPAVFHSVMLATAVGDGDLDGLDPADFAAEWKWDGIRVQLANVGG
ARRLYSRSGDEISSAFPEIIEAADITGVIDGELLVGGTMRSNRATGTFADLQQRLNRKTV
SRKLMDEYPAFIRAYDILFSGERDIRPEPFRVRREALSSLIEAASPQHFDLSPLVGFSSW
KELDELRSSPPDPVIEGVMLKRLDSPYMAGRAKGPWFKWKRAPFNIDAVLMYAQRGHGKR
SSYYSDFTFGVWAEGEDGASLVPVGKAYFGFTDAELEVLDRFVRDNTVERFGPVRAVRAE
PDSGFVVEVAFEGLNRSTRHKSGVAMRFPRIARLRPDKLPRDADRLETLQAMMGTQR

NT seq 1614 nt +upstreamnt +downstreamnt
atgaaagcatttgccgaactgctcgaccggctcgtgctgacgccgcagcgaaacgccaag
atccggttgctcgtcgactatttccgcggcgcacccgatccgagccgcggctatgcgctg
gcagcgatcgcggggacgctctcgctcaacacggtgaagcctgccctcattcgcgacctg
ttgctcgagcgcatggacgacgtgctgttccactattcctacgactatgtcggcgacctc
gcggaaacggtctctctcgcctgggagccgccgccggacgtcgcccttcaggacattccg
ctcggcgaggttgtcgagcggctgcagcgggccggccgctccgaggtccgttcgctcgtc
cgcgactttctggaccggctcgacacctccggccgcttcgccctcctgaagctcgcgaca
ggaggcttgcgcatcggggtctcggcacggctcgcgaagcaggcgctggcggagatgggc
ggcaaggaggtgagcgagatcgaaacgctctggcacggattggagccgccatacctgccc
cttttcctctggctcaccggtgaggcggagatgccggtgctcaagacacctgcggtcttt
cattcggtgatgctcgcaacagcggtcggcgatggcgatctcgacgggctcgatccggcc
gacttcgcggccgagtggaaatgggacggcatccgcgtccagctcgccaatgtcggcggg
gctcgacgcctctattcgcgcagcggcgacgagatatcctccgcctttcccgagatcatc
gaagctgccgatatcacgggcgtcatcgacggcgagcttctggtcggcggaacgatgcgc
agcaaccgcgccacgggcacattcgcggacctgcagcaaaggctgaaccgcaagaccgtc
agccgcaagctgatggacgagtatccggccttcatccgtgcctacgacattctcttttcc
ggcgagcgcgatatcaggcccgagccctttcgtgtgcgccgcgaagccctgtcgtcgctg
atcgaagcggcctcgccgcagcatttcgatctctcgccgctcgtcggcttttcaagctgg
aaggagctcgacgagctgcgctccagcccgcccgatccggtgatcgaaggcgtcatgctg
aaacggctggattcgccctatatggccggacgggccaaggggccgtggttcaagtggaag
cgggcgcccttcaatatcgacgccgtgctgatgtatgcccagcgcggccatggcaagcgg
tccagctattactccgatttcaccttcggcgtctgggcggagggtgaagacggggcgagc
ctcgttcccgtcggcaaggcctatttcggcttcaccgatgccgagctcgaggttctcgat
cgcttcgtgcgcgacaatacggtcgaacgcttcggccccgtgcgcgcggtgcgcgccgaa
cccgacagcggcttcgtcgtcgaggttgcctttgaaggcctcaaccgctccacgcgtcac
aaatccggggtagccatgcgcttcccgcggattgcccgcctcagacccgacaagctgcct
cgcgacgccgacaggctcgagacactgcaggcgatgatgggaacgcaacgctga

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   OC (1)   
   RHIZOBASE-SME (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (17)   

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