KEGG   Candidatus Karelsulcia muelleri GWSS: SMGWSS_056
Entry
SMGWSS_056        CDS       T00630                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase beta' subunit
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
smg  Candidatus Karelsulcia muelleri GWSS
Pathway
smg03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:smg00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    SMGWSS_056 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:smg03021]
    SMGWSS_056 (rpoC)
   03400 DNA repair and recombination proteins [BR:smg03400]
    SMGWSS_056 (rpoC)
Enzymes [BR:smg01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     SMGWSS_056 (rpoC)
Transcription machinery [BR:smg03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     SMGWSS_056 (rpoC)
DNA repair and recombination proteins [BR:smg03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      SMGWSS_056 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RPOC_hybrid ApbA_C RnfC_N
Other DBs
NCBI-ProteinID: ABS30483
UniProt: A8Z5T2
Position
complement(51207..55730)
AA seq 1507 aa
MKNKMKNKMKNKMKNKHKQMKIKKPMNLRNQIQILKIINFINKMSKKQYKISHFMTTKIS
LRISSPEEILKDSYGEIIKPETINYRTNKPERNGLFCEKIFGPIKDYECFCGKYKKKLYK
EIIRLRQLNKELKVKGLFCNRCGVEITKNTVRRTRMGHINLVVPIVHIWGFRSTPNKIGS
ILGLSSQQLDMIIYYERYVVIQPGIANSYNNLSIKKLDLLTEEEYTYILNKIPIGNKYLY
DNDPNKFIAKMGAECLEELLIRVDLEVLLSDLKKEIKNEESKQRKIELFKRLNVVECFIE
GKKKGNKIESIILKVLPVIPPELRPLVPLDGGGYASSDLNDFYRRILIRNNRLKRLIHIS
APEIILRNEKRMLQEAVDSLLDNSKKILAVKSESNRPLKSLSDSLKGKQGRFRQNLLGKR
VDYSARSVIVVGPKLKLHECGLPKEIAAEIYKPFLIRKLLERKIVRTVKSAKKLISKKDP
IIWDILKYLLKGHPVLLNRAPTLHRLGIQSFQPKLIEGKAILLHPLVCSAFNADFDGDQM
AVHLPLSNEAILEAKLLMLASQNILNPANGYPITVPSQDMVLGLYYMTKELKSTYESKIK
GEGMCFSSLEEVEIAYNNKVVEIHAIIKVKVKILENIGLISKIIKTTVGRVLFNIVVPPK
VGYINKLLTNKSLRKIINYILYNTNIPTTAKFLDKIKDLGYYHAFKGGLSFNLNDISIPK
EKKSLVKRAIEKVSLVKDNYNLGLITNNERYNQIIDIWTNTNVSLTEKVINYMRKSKQGF
NSVYMMLDSGARSSKEQIRQLSGMRGLMAKPQKTSSLGSEIIENPILSNFLEGLSILEYF
ISTHGARKGLADTALKTADAGYLTRRLVDSAQDVIIQEDDCKTLLGIKISAVKKKEKIIE
TLSSRVLGRIALNNIYDPTNNNVLIKSSQMIDEKNINLIEKASIDTIEVRSPLTCKSKTG
ICRKCYGRNLANGLMIQKGEAIGVIAAQSIGEPGTQLTLRTFHVGGTAGNIYEYSKIKAK
YDGIIEYEDIQVVKNLVISRSSEIRLLNNHKDKVILMKKKIPYGAKLYVSNKQLVKKNDI
ICSWDPYNAVIIAEFTGKIRYSNIERDEQTGFKVISERKTPTLKIVNKKNEILKSYNIPV
GAHLVVNDGDIINEGSILIKIPIKDLKSGDITGGLPRLSELFEARNDDDDDDYYDSDYYD
YYDYSDDDDDYDDYDDYYYNYDDDENDNDNDYDYDYDYDYDYDSDSHNSYSHNSYSPSSN
DNYDYDYDSDSDYDSDYDYGDISLNEILDIKGLRAAQKKLINEIQEVYRSQGVKINDKHF
EVIVRQMTQKVEIIKSGDTSFLEGNIEYTDVFLEENKRILNMKFIEESGDSKKFFKGQLV
NFHELKKENYLLKLSNKNKILFRDVITAISKPIIQGITKAALQTKSFLSAASFQETTKVL
YEAAISNKTDYLNGLKENVILGNKIPAGTGLKKSSYEEIIIGDGNQKLKKKDSEINKKLK
IENKILK
NT seq 4524 nt   +upstreamnt  +downstreamnt
atgaaaaataaaatgaaaaataaaatgaaaaataaaatgaaaaataagcataagcaaatg
aaaataaaaaaaccaatgaatctgaggaatcaaattcaaatattgaaaattattaatttt
attaataaaatgagtaaaaaacaatataaaattagtcattttatgacgactaaaattagt
cttaggatttcttctcctgaagagattttaaaagattcatatggagaaataataaaacct
gaaacaataaattatcgtactaataaacctgaaagaaatggtttgttttgtgaaaaaatt
tttggacctataaaagattatgaatgtttttgtggcaaatataaaaaaaaactttataaa
gaaataatccgtttaagacaattaaacaaagaattaaaagtaaaaggattattctgtaat
agatgtggcgtagaaataacaaaaaacacagttcgtagaaccagaatggggcatattaat
ttagtagtacctatagtacatatatggggatttagatctactccaaataagataggttct
attttaggattatcatctcaacaacttgatatgataatttattatgaacgttatgtagta
attcaaccaggaattgctaatagttataataatttatctataaaaaaattagatttatta
actgaagaagaatatacatatatcttaaataagattccaataggaaataaatatttatat
gataatgaccccaacaaatttatagctaaaatgggagctgaatgtttagaagaattatta
atacgtgttgatttagaagttttattatctgatttaaaaaaagaaattaaaaatgaggaa
tcaaaacaaagaaaaattgaattatttaaaagattaaatgtagtagaatgttttatagaa
ggtaaaaaaaaaggaaacaaaattgaatctattattttaaaagttcttcctgtaattcct
ccagaattacgtcctttagttcctttagatggtggagggtatgctagttctgatttaaat
gatttttatagaagaatattaattcgtaataatagattaaaaagattaatacatatttca
gctcctgaaataatattacgtaatgaaaaaagaatgttacaagaagctgtagattccctt
ttggataattctaaaaaaattttagcagtaaaatcagaatctaatagaccattaaaatct
ttatctgattcattgaaaggaaaacaaggtcgttttagacaaaaccttttaggtaaaaga
gtagattattcagcaagatcagtaatagtagtaggtccaaaattaaaattacatgaatgt
ggattacctaaagaaatagcggctgaaatttataaaccttttcttattagaaaacttctt
gaaagaaagattgtaagaacagtaaaatcagctaaaaaacttatatctaaaaaagatcct
ataatctgggatatattaaaatatcttttaaaaggtcatcctgtcttattaaatagagct
cccacacttcatagattaggaattcaatcatttcaacctaaacttattgaaggaaaagct
atactattacatccattagtttgttcggcatttaatgctgattttgatggagatcaaatg
gcagtacatttaccattatcaaatgaagcaattttagaagctaaattattaatgttagca
tcacaaaatattttaaatcctgctaatggatatcctattacagttccatcacaagatatg
gtattaggtttatattatatgactaaagaattaaaatctacttatgaaagtaaaattaaa
ggagaaggaatgtgtttttcttctcttgaagaagttgaaatagcttataataataaggtt
gtagaaattcatgcaataataaaagtaaaagttaaaatattagaaaatattggattaata
tcaaaaattataaaaacaacagtaggtagagtattatttaatatagtggttccaccaaaa
gtaggttatataaataaattattaacaaataaatctttaagaaaaataataaattatatt
ttatataatacaaatatacctactacagcaaaatttttagataaaataaaagatttagga
tattatcatgcctttaaaggaggtttatcatttaatttaaatgatataagtattccaaaa
gaaaaaaaatctcttgtaaaaagagctattgaaaaagtatctttggtaaaagacaattat
aatctgggattaataactaataatgaacgttataatcaaattattgatatatggactaat
actaatgttagtttaacagaaaaagttattaattatatgcgaaaaagtaaacaaggattt
aattcagtatatatgatgcttgattctggagctagaagttcaaaagagcaaatacgtcaa
ttatctggaatgagaggacttatggctaaacctcaaaaaactagttcattaggttcagaa
attatagaaaatccaattttatctaatttcttagaaggattatctatattggaatatttt
atatctacacatggggcaagaaaaggattagctgatactgctttaaaaacagcagatgct
ggatatttaacaagacgtttagtagattcagcacaagatgtaattatacaagaagatgat
tgtaaaactttactaggaataaaaatatctgcagtaaaaaaaaaagaaaaaataatagaa
acattatcatccagggttttaggtcgtatagctctaaataatatttatgatcctactaat
aataatgttttaataaaatcatctcaaatgatagatgaaaaaaatattaatcttatagaa
aaagcttcaatagatactattgaagtaagatctcctcttacatgtaaatctaaaacaggt
atttgtagaaaatgttatggaagaaatctcgcaaacggtttaatgattcaaaaaggagaa
gcaataggagtaatagccgcacaatcaattggtgaaccaggtacacaacttacacttcgt
actttccatgttggaggtacagctggtaatatatatgaatattcaaaaataaaagctaaa
tatgatggaataatagaatatgaagatattcaagtagttaaaaatctagttatttctaga
tcatctgaaattagattattaaataatcataaagataaagttattttaatgaaaaaaaaa
attccatatggagctaaattatatgtttctaataaacaattagttaaaaaaaatgatatt
atctgtagttgggatccatataatgctgttattatagcagaatttacaggaaaaataaga
tattcaaatattgaaagagacgaacaaactggttttaaagtaatatcggaaagaaaaaca
cctactttaaaaatagtaaataaaaaaaatgaaatattaaaaagttacaatatacctgta
ggtgcacatttagtagtaaatgatggagacattataaatgaaggaagtattttaataaaa
atacctataaaggatttaaaatcaggagatataacaggaggattaccccgtttatcagaa
ttatttgaagcaagaaatgatgatgatgatgatgattattatgattctgattattatgat
tattatgattattctgatgatgatgatgattatgatgattatgatgattattattataat
tatgatgatgatgaaaatgataatgataatgattatgattatgattatgattatgattat
gattatgattctgattcacataattcttattcacataattcttattcaccttcttcaaat
gataattatgattatgattatgattctgattctgattatgattctgattatgattatgga
gatatatcactaaatgagattttagacataaaaggattaagagctgctcaaaaaaaattg
attaatgaaatacaagaagtatatcgttcacaaggtgtaaaaattaatgataaacatttt
gaagttatagtaagacaaatgacgcaaaaagtagaaattataaaatcaggagatacttct
tttttagaaggtaatattgaatatacagatgtctttttagaagaaaataaaagaattttg
aacatgaaatttattgaagaatcaggtgattctaaaaaattttttaaaggtcaattagtt
aattttcatgaattaaaaaaagaaaattatttattaaaactttcaaataaaaataaaatc
ttatttagagatgtaattactgctatatctaaaccaataattcaaggtataactaaagct
gctttacaaactaaatcttttctttctgctgcgtcttttcaagaaactacaaaagtttta
tacgaggcagctataagtaataaaacagattatttaaatggattaaaagaaaatgttata
ttaggcaataaaattcctgcaggaactggattaaaaaaatcttcttatgaagaaattata
attggtgatggtaatcaaaaacttaaaaaaaaagattcagaaattaataaaaaacttaaa
attgaaaataaaattttaaaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (179)   
   KEGG ORTHOLOGY (1)   
   RefGene (176)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (8)   
   Pfam (8)   
All databases (196)   

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