KEGG   Breviolum minutum: v1.2.023372.t2
Entry
v1.2.023372.t2    CDS       T04349                                 
Symbol
symbB.v1.2.023372.t2
Name
(OIST) -
  KO
K12879  THO complex subunit 2
Organism
smin  Breviolum minutum
Pathway
smin03013  Nucleocytoplasmic transport
smin03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:smin00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    v1.2.023372.t2 (symbB.v1.2.023372.t2)
  09122 Translation
   03013 Nucleocytoplasmic transport
    v1.2.023372.t2 (symbB.v1.2.023372.t2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:smin03019]
    v1.2.023372.t2 (symbB.v1.2.023372.t2)
   03041 Spliceosome [BR:smin03041]
    v1.2.023372.t2 (symbB.v1.2.023372.t2)
Messenger RNA biogenesis [BR:smin03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     v1.2.023372.t2 (symbB.v1.2.023372.t2)
Spliceosome [BR:smin03041]
 Complex C
  Other components
   EJC/TREX
    v1.2.023372.t2 (symbB.v1.2.023372.t2)
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    v1.2.023372.t2 (symbB.v1.2.023372.t2)
SSDB
Motif
Pfam: Tho2 THOC2_N Pyridoxal_deC dsrm Aminotran_5 Dicer_dimer Thoc2 Cys_Met_Meta_PP DUF3642
AA seq 2341 aa
MVEMESEERERIYDQLLEVVSGVLAGQMPGQNAVELLSPISSKDSLQQVLVDALWLAGFA
ATEAPGNKKEARDEFMNFCNLLQKEGVVSKPILAGALETETIPAAVCNMTLLRKKQNQAK
TKARYTVTRFNLLREHNEGYARLIMYLDRLIHLDYDVHGTTDELNNIRESIVDDVMLLIG
HSYLCPNRIIAMAMDSYEKLLMEEEEPSKRPQALVALLKRFSRDRLTKVAAFLLSTSPAQ
GKDAKDSKDAKEVKSDQDLRLSQFLAIASLISLNIIDLRTLWSYLEPGEKKINEAYHMLQ
RRYEIKLKTITVIDLSGKSNLHADKRNFNACVKNFNQLLNKKIRLVEAMISINDWRNTSV
MLTHLRKLCRPCMNHYLRSALCDLLKWIIEPLLPKSANAAALQPYKSRRRFAWGLSLKGA
DGQVPVCLRQATDIQDFPTATKQVLDQLEFYLHTDNVVMGNLWQVMALSLKDPPAQSPVI
AASAPSAAPSSQILDDRLVAVIYKHLLPAISIAKPCPWLSSMAWNVLRQLTIFQRYMIYS
CWETRYDQFLLKYSYEEAKFEAKKILKRVVSSDKSDRDRDDPTTYRPHPVFCQLCQTNPI
PIVEVMLKDIEIGFNVNMIQPYVDLTGKCSEMMTDVVGYVLARNCERGATETRAFLNPAD
GFLSPWLSNFAEFIGRFYKKHPQTNLVGILTAVSRRMMSDLPEVGAGRQSSKKFKGESLI
RVVLEKLMEHMGGLIVVKDLTEEQLVCLAGGPRLRLESVSVGTRPDPIRKEKTRKALMDS
IVELGLATALWDCLSKQRLYFLSENFSEVNSGEGALKLLCALIDGSQDCFLSLIDFISQA
SAREKYMKLVPPFQQIFGVLEPPLAYAALRPGLPPFARGAAKADPKASLVATAEEVELQK
QLLGVAQKCLSKSTDEDGLSMDFYVTFWRLSLQDIFVPTEGYERVLSRIMARQREDEDAK
ARMDRKYNLDTHSREYKNLQRNIVRQKEAYDKLKEEQLQQKLNFEKVLARLELEKSGWFL
KKCPEATLALVAEMFMPRALTSYADAMFCCKFARLLIRMKTPGFLFLDFFNSWTLMLCMN
LRSCTEREALICGIMLREMMAYVYSLRKSEKVYEQEMKDNPCFHRHHYDDKNVDTPIEFA
KHNDMIRGHNKWEGRIYKVLKQNLESDEWSDKRNTLLLLSQSCDSYPIVEKYARGVLQCV
ENVRDKEKASDLKTLAASLAVKLRASSKTWVRQDTKEAPKATPKMAPKPQPKDGSKDPGK
EATKEVGKEDRPTPPAKELPKEIKEAKAKPKEGQSGQKPKEANQKDQKEELKGLGECRGI
ALEFIGNSEGKEKSKEKERENKRRADPSRNGGDEKAEKRPRRSDDDPKRDDDVVMVTSPH
RTPIARSGLPRNSLMPSNSDRDGRSSRSGYGDSRRPPNTQYTARHERSDRRRHQAIPQTK
TRAMAPEGRALLLALLTLLLPSRMHRKMTGSVWAISSTARVNSAWSVLCAALAWHCLRSC
WMEWWQGPLSILARASKHTLAFACSLPFVRSIVDREVGKELVAIEKKMHGNGDSQAMVKL
PQEAMSSSQIWHQIQKLQAAEASVYVGVGKKWAGIYHSPDGELVDLQNRVWSLYNCSNTL
YEGVFPSVRKFEAELISWVLHLLHAKSSSCGLLTSGGTESVLLAALSYRELGRRRGIATP
RVLAANTCHPCIVKACHYFGLKLTKIQVDASTGFALTAAAVKQHITADVVCIYASAPTFP
HGVIDHVEDLGHLAKSKGIGLHVDNCLGGILLSFLDSQNLIPGHQLWDFEVDGVTSISVD
IHKYGNASKGVSVIAFRDEDLRRLTYVPVTDGCEGLYITPTMQGARGGAVIAQAWATMLS
FGHAGYKHFAAEIHKSHTRCQEIVTSIPGLFVLCKCHACIVPVGSNKYNIYAVASVLEEK
GWNLATGRSPPYLGICIGERHSQILDSFEQDLRSATAFLDENPSYKPTGAAAVYGAMSTT
PTAILEEVVKRYVDMRLWAPRSRIPVVRLDSMATAAAAQSSVDPKTQLNHFCQKFCQRPV
TKSDISYTTNKFGNRYQAIVRLDCVQGQEYAGHLVLNQKDAEKSAAEQAIIAFSQSNLLQ
EQQAQPVDKDKKKKKQTKLTPEEHALRKAKQEEEGNPAVTPKTLLNALVMKIVKRYLQKG
ETVYETKTYAGGGHQATVKITALPDEWGTRMWAGHVCNTKQKAEQSAAEMALESIKQDAE
LMKESEKPKGMGKGEKGKGKGKGGMWGPWQFGWWNAKGSDLPRKPVLTEPISGEVIEWKD
SFGWIKPDVAINHKDAGRREGKIFVGKSDVPENVQMAAGVKLSFTVYEDMMGLGAQDLQA
N
NT seq 7376 nt   +upstreamnt  +downstreamnt
aaatcacaggcaaagatatgcacagatcatttcgcagctcattcgctgacattgagccat
tgggcaatggttgaaatggagagtgaagagcgagagagaatctatgaccaacttttggag
gtggtcagcggtgtccttgcaggacagatgcctgggcaaaatgcggtggagttgctatca
ccgatctcttcgaaggattccttgcagcaagttctggtagatgctttgtggcttgcaggt
tttgcagcaactgaagcgccaggcaacaaaaaggaagctcgagatgagttcatgaatttc
tgcaacctcttacaaaaagaaggtgtcgtatcaaaacccatcttggctggtgccctggaa
acagagaccatacccgctgcggtttgcaacatgacacttctccggaagaagcagaaccag
gcaaagaccaaagcccgctacacagtgaccagattcaatcttctgagggagcacaacgaa
ggctatgccaggttgattatgtacttggatagattgatccacttggactatgacgttcat
ggcaccactgatgagctgaacaatattcgagagagcattgtcgatgatgtgatgttactt
attggacacagctatctatgtcccaatcggatcattgcgatggccatggacagctacgag
aagctgttgatggaagaggaggagcccagtaagcgaccacaagcattggtggcgctactg
aagcgatttagcagagacagactgacaaaggttgctgctttccttctcagcacttctcca
gcacaaggtaaggatgcaaaggattcaaaggatgcgaaggaagtgaagtctgatcaagat
cttcgactttcgcagttcttggccattgcctccttaatctctctcaatatcatcgatctt
cggactctttggtcatacttggagcctggtgagaagaagatcaacgaggcatatcacatg
ctgcaaagaagatatgagataaaactgaagaccatcacagtcattgatctttctggaaag
tccaacttacacgcggacaagcggaatttcaatgcttgtgtcaagaacttcaaccagctc
ctaaacaagaagatccgtttggtagaggccatgattagcatcaatgactggcggaacacc
tctgtgatgctgacacatttgcgaaagctctgcagaccatgtatgaatcactacttgcga
tctgcactgtgcgatctgctcaagtggattattgaaccgctcttgccgaaaagtgcaaat
gcagcagccttgcagccctacaaatcacggcggcgctttgcatggggcttgtcactaaaa
ggagctgatgggcaagtgccagtgtgccttcgacaagccacagacattcaagactttcca
acagcaaccaaacaagtcttggatcagttggagttctacttgcataccgacaatgtcgtc
atgggcaacctctggcaggtcatggcactgtcgttaaaggacccgccagcacaaagtcct
gtcattgctgcgtcagctcctagtgcagctccgtcaagtcaaatcctggatgatagattg
gtagcagtgatttacaagcatttgctgccagcaatctccattgcgaaaccttgtccctgg
ttgagcagcatggcatggaatgtcctgaggcaacttaccattttccagaggtacatgatc
tatagctgttgggaaaccaggtacgatcaatttctattgaagtacagctatgaggaagca
aagttcgaagccaagaagatcttgaagcgggttgtttccagtgacaaatctgatcgagat
agagatgacccaacgacctacagaccgcatccggtcttttgccaactttgtcaaacaaat
cccattccaattgtggaagtgatgctgaaagacatcgagattggcttcaatgtcaacatg
atccaaccatatgttgacctcactggcaagtgttcggaaatgatgacggatgttgtgggc
tatgttttggcaagaaactgtgagcgtggggccacagagactcgggcatttctgaatcca
gcagatggctttctctctccttggctcagcaattttgctgaattcattggtcgcttctac
aagaagcacccgcagaccaatctggtgggcatccttacagctgtgtcacgtcgaatgatg
agtgatcttccagaggtaggtgcgggacgtcaatcatccaagaagttcaaaggtgaatct
ttgatccgtgtggttttagagaaattgatggagcacatgggtggcctcattgttgtgaag
gatttgacagaggagcagctggtctgcctagcaggtggtccacgcttgcgcttggagtct
gtatcggttggaacaagaccagatcccatccgcaaggagaagaccaggaaagccttgatg
gatagcattgtcgagttgggcttggccacagctctttgggattgcctcagcaagcagcgt
ctctactttctttccgagaatttctcggaggtcaacagtggtgaaggtgcactgaaactg
ctgtgtgcattgattgatggaagccaagattgcttcttgagcctcattgatttcatttcc
caggcttctgccagagagaagtatatgaaattggtgcctccatttcaacaaatctttgga
gtcttggaaccaccactggcttatgctgccctgcgaccaggtctacccccctttgcacgt
ggtgcagccaaggcggatcctaaggctagtttggttgcaacagcagaggaggtggagctt
caaaagcaactgctaggagtggctcagaagtgcttgtcaaagtcaactgatgaagacggg
ttgtccatggatttttacgtgacattctggcgcttgtccttgcaagacatctttgtgccc
acagaaggctatgaacgagtcttgtctcggatcatggctcgtcagagggaagatgaggac
gcaaaggcaagaatggatcgaaaatacaacctagacacacatagccgggagtacaagaac
ctgcaacgaaatattgtgcggcaaaaggaagcctatgacaagctgaaagaagaacaactt
cagcagaaattgaactttgagaaggtcttggcccggcttgagttggagaaatcgggatgg
tttctcaagaagtgcccggaagctactctagcgctggtggcagagatgttcatgcctcga
gctctcacctcctatgcagatgctatgttttgctgcaaatttgctcgcttactcattagg
atgaagacacctggatttttgtttctggatttcttcaatagttggacactcatgctgtgc
atgaatctccggtcttgcacagagcgggaggctctcatttgtggcattatgctgcgagag
atgatggcctacgtctatagtttgcggaagagcgagaaggtctatgagcaagagatgaag
gacaatccatgctttcatcgccaccactatgatgacaagaatgtggatactccgattgag
tttgcaaagcacaatgacatgattcgaggtcataacaaatgggaaggccggatctacaag
gtgttgaagcagaatttggagtcagatgagtggtcagacaagagaaataccttgctgctc
ctcagccagtcatgtgacagctatcctattgtagagaagtatgcgcgcggcgtgctgcag
tgtgtggagaatgtccgtgacaaggagaaagcaagtgacctgaagacgttggcagcttcc
cttgccgtcaagctgagggcatccagcaagacatgggtgaggcaagatacaaaagaagca
ccaaaagcaactccgaagatggctccaaagccgcagcccaaggatggatcaaaagatcca
ggcaaggaggcaacaaaggaagtgggcaaggaggatcggccaacaccacctgctaaggag
ttgcctaaggagatcaaggaagctaaggcaaagccaaaggagggccaaagcggccaaaag
ccgaaagaagcaaatcaaaaggaccagaaggaggagcttaaagggctgggcgaatgcagg
ggcatagccttggaatttatcggaaactctgaggggaaagagaagtccaaagaaaaggag
cgagagaataagcggcgagctgatccttcgcgaaatggcggggatgagaaagcagagaag
aggccacggcgcagtgatgatgaccccaagcgggatgatgacgtggtgatggtgacgtcg
ccgcaccggacgccaattgcccggagcgggctgccacgaaactccctgatgccaagtaat
agtgacagagacggccgttccagccgctctggctatggagacagcagacggcctcccaat
actcagtataccgccagacatgaaagatcagatcgccgcaggcatcaagccatcccacaa
accaagacaagagccatggcacctgagggccgtgccttgctgctggcgcttttgaccttg
cttttgccttcgcggatgcatcgaaaaatgacgggctccgtttgggccatctccagcaca
gcaagggtgaacagtgcctggtctgttttgtgtgcagctttagcatggcactgtctgcga
agttgttggatggaatggtggcaggggccgctgagcatcctggcccgagcttccaaacac
actttggctttcgcttgcagcttgccttttgtgcgaagtatcgtagaccgtgaagtgggc
aaggaactagttgccatagagaagaaaatgcatggcaacggagattcgcaagctatggtg
aagcttcctcaagaggccatgtcttcttctcaaatatggcaccaaatccaaaaacttcag
gcggctgaagcgtcggtctatgtcggtgtgggcaaaaagtgggccggaatttatcattcc
cctgatggagagttggttgatttacaaaatcgagtttggagcctctacaactgttcgaac
acactctatgagggtgtctttccttctgtccgcaagtttgaagcggagctgatcagttgg
gttttacatttgctgcatgcgaagagcagttcatgtggtttgctcacctctggtggcacg
gaatctgtgctgctagccgctctcagttatcgtgagcttggaaggcgccggggcattgct
actccacgagtgctggcagccaacacatgtcatccctgtattgtgaaggcatgtcactac
tttggattgaagctgacgaagatccaagttgatgcatctacaggatttgcgctgactgct
gctgctgtcaagcaacacatcaccgctgatgttgtttgcatttatgcatctgcacccact
tttcctcatggagtcattgatcatgttgaagaccttggacatttagccaagtccaaaggg
atcggcttgcatgttgacaactgccttggaggaattctcttgtcattcttggactcgcag
aacttaattccaggacatcaactttgggacttcgaagttgatggcgtaacctccatcagt
gtggacattcacaagtatggcaatgcctctaaaggtgtcagtgttatcgcctttcgtgat
gaagacttacggagattaacctatgtacccgtgaccgatggttgtgaaggtctctacata
acaccaactatgcaaggagcacgtggaggcgcagtgattgcccaagcatgggcaacaatg
ctgagttttggacatgcaggttacaaacacttcgcagccgaaattcacaagtcccatact
agatgtcaagaaatcgtgacgagcattccaggtttgtttgtgctgtgcaaatgccatgca
tgcatcgttccagttggctccaacaagtacaacatctatgctgtggcctctgttttggaa
gaaaagggttggaatttggcaacagggcgaagtccgccctatttgggcatttgcattggg
gagcgtcattcacagattctagattcgttcgagcaagatctgcgctctgcaactgctttt
ttggatgaaaatcctagctacaagccaacaggggcagcggcagtgtatggagctatgtcc
accactcccactgcaattttggaggaggttgtcaaacgatatgttgatatgcgattatgg
gcgccacgatcgcggattcctgtggttaggctcgactcaatggcaaccgccgcagccgcc
cagtcctccgtagatccgaagactcaactgaatcatttttgccagaagttctgccagcgg
cctgtgacaaaaagcgatatctcatacaccactaacaagtttggcaacaggtatcaagcc
attgtcaggcttgactgcgtgcaggggcaagagtatgcagggcatctcgtcctcaatcag
aaggatgctgagaagtccgctgctgaacaggccatcattgctttctcacaaagcaacctt
cttcaggagcagcaggcgcagcctgtggacaaggacaagaagaaaaagaagcagacaaag
ctaacaccagaggagcacgctttgagaaaggccaagcaggaggaagagggaaaccctgct
gtcactccaaagaccttgctaaatgcgctggtgatgaagattgtcaagcgctacttgcag
aagggtgaaactgtctacgagaccaagacctatgcaggtggtggacatcaggccactgtg
aagatcacagccttaccagatgaatggggaactcgaatgtgggcaggtcatgtttgcaac
accaagcagaaggcggagcagagtgcagcagagatggctttggaatccatcaaacaggat
gccgaactcatgaaggagtccgaaaagcctaaagggatgggaaagggcgagaagggcaaa
ggtaagggcaagggaggaatgtggggcccatggcaattcggatggtggaatgcaaaaggt
tctgatctcccacgcaagcctgtgctcacggagcccatttctggagaagtcatcgagtgg
aaggactccttcgggtggattaagcctgatgtggccatcaaccacaaggatgcgggccgc
cgcgaagggaagatctttgtcggtaagtcagatgtgcccgagaatgtgcagatggctgct
ggtgtcaagctaagcttcacagtgtatgaggatatgatgggtcttggagctcaagatctg
caagccaactgaatacattcagcgctggcgcgaggacctagggctggtgtgtggccgtcc
cccttggcttccagcacaggatgcgtcgagggtccacgccattctacgtccttgtttgaa
ccctgtcgatttgatgggcacctacgaggcaccccgtgggccccttaaggttgacagtgc
gacagtgggggaagtggcatttgacttatgacatctctctgtctcgcgaggacctcgaga
tatgccacacaactaagacttgacgcatacgattttgataaaaagagagttaaact

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (1233)   
   KEGG ORTHOLOGY (1)   
   RefGene (1231)   
   OC (1)   
Protein domain (9)   
   Pfam (9)   
All databases (1248)   

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