KEGG T04349: v1.2.033400.t1

Breviolum minutum: v1.2.033400.t1

Entry

v1.2.033400.t1    CDS       T04349

Symbol

symbB.v1.2.033400.t1

Name

(OIST) -

K12842

U2-associated protein SR140

Organism

smin Breviolum minutum

Pathway

smin03040

Spliceosome

Brite

KEGG Orthology (KO) [BR:smin00001]
09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    v1.2.033400.t1 (symbB.v1.2.033400.t1)
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:smin03041]
    v1.2.033400.t1 (symbB.v1.2.033400.t1)
Spliceosome [BR:smin03041]
Complex A
  U2 snRNP components
   U2 related factors
    v1.2.033400.t1 (symbB.v1.2.033400.t1)
Complex B
    v1.2.033400.t1 (symbB.v1.2.033400.t1)

SSDB

Motif

Pfam:

Surp RRM_1 CID RRM_5 CTK3

AA seq 969 aa
MSQDGARTCTSLLRCKEDWPVLKSSLQSPALQFSLKLHGKKPGLPPPPAAGYMQAAGYAH
AGAQPGRYAPGPGGHTPPPASRMSASGSSAAQRGPGRREMDSLLEELKAKQEQRKELTEK
KENDGLPQGDAGVPAVNANFPNFPVAPPPAVGRPPPSEIVRPPTALGSSGGSSWGAGGAS
AAADELASVLFLRELPPSASEDAICTLFSRYGTVTAVDIVRNRDDGRIQGYVMVDNRENA
QRAKDALQDRELDGVPLWIEWSKSHAPQGIQVETGALSKDGKSRVVIVEIPADTKKRRTI
DRLARYVSQEGYQFEKLIMQRESPEGMFDFLFHHDSPENIYYRWRMFAFTQRDNFKVWRT
QTFRIYEGGRWWRPPACEAAIEAVEKKKQSKFSSSAAEDASPQNAAASQVPNPATAVKAA
RGTAVLPAHWTQEDIDEERERQRLEERATQERQKRDRNRSIAGGKRLSDEDWSQLEQLLR
NVSSTRASIMETMVFCLDKSEWAIEIAETIAESLTIAETEIPLKVARLLVVSDILHNTTS
SRQAAWTYRREFEKSLPDIFEQFEIGLQRSESKLQVSQTKDQIVRLLKVWEDWGLFAPQY
LRGLEAAVIIGVRRLRLLSNKGDLSREPAWLEPKLADWRRQHFSQLEKMCRTRGLRCSTA
HLEPTKQQSLEEARKEWLIDRLVTYELLAYDKEQARLQQAKEDAANKLSRRRSKYAMDDI
DGEDCGDGFPMDEGELDGEPIDLSTPGDIYNAVEMAKQAPEALASYLGTASAGAVLGSVM
NSSPAASAAEEVVSVISSEEAAEAADDKEMLDVQQSSAQETTEASQPELSLCVALGRSVV
AMTTEDSKQRAAYSGRQSTSTRNPHTASKAVDVKALAKLSIEDRVLAQWRAACGCPISDE
AKTQFRIECLGRTFNLADVRLWQNHVPGKGSQASIYLEFFFDGSPDELEDQEEARQSWLL
SRKRWLLTP

NT seq 3421 nt +upstreamnt +downstreamnt
agcggaaactaaggtgggaaccaattgaatgcactcaatgctggctttccaactacacgt
cccactgtctcggaaaatatgaggagtgcttccagacccttccagagccttcgcaaaaga
gcaagattagcaaaactaattccagcaccgaaggggagctggtggtttgaacggttggcc
tcactgagctgaacatgggttcaaaggctgtggaagcttgggttcaaaggctgtggaagg
agtgctgcacaggcggatccagaccgtgcaattgcatagtggacagctacttggctctgc
gttgttgaatagtttgagcaaagtttagatctcctgcttgtagtgactctatgagtctat
gagtcaggatggggcccgtacgtgtactagtttgcttcggtgcaaggaagattggcctgt
gctgaagtcaagcttgcaaagccctgccttacagtttagtttgaagctgcatggcaaaaa
gcccggattgccaccaccaccagcagcgggctacatgcaggcagcaggctatgcacacgc
aggggcgcagcctggccgatatgccccgggccctggaggacacaccccacccccagcttc
aagaatgtcagcatcggggtcatccgcagcgcagcggggccctgggcgacgtgagatgga
ctcactgctggaagaactcaaagcgaagcaggagcagagaaaagagctaacagaaaaaaa
agaaaatgatggcttgccacaaggagatgctggagtcccggctgtgaatgccaacttccc
aaactttcctgtggcacctccaccggcagtaggccgaccccctccgagcgaaattgttcg
accgccaacggcattgggcagctctggaggaagttcttggggagccggtggtgcaagtgc
cgccgcggatgaactggcttcagtactctttttgcgtgagctgcctccctctgcatccga
ggacgctatttgcactctcttctccagatatggcacagtcactgctgtcgacatcgtgcg
aaaccgggatgatggccgcatccaaggctatgtcatggttgataatcgggagaatgctca
gagggcaaaggacgcactgcaggatagagaattggacggagtgccgctgtggattgagtg
gtccaagagccatgctccacagggcattcaagttgagactggagcactaagcaaggatgg
gaaatcccgggtcgtcattgttgaaatcccagcagataccaaaaagaggcggacgattga
cagacttgccaggtatgtgtctcaagagggctatcagtttgaaaagctcatcatgcagcg
agagtctccagagggaatgtttgacttccttttccaccatgactcgcctgagaacatata
ctatcgatggaggatgtttgcttttacacagcgcgacaacttcaaggtgtggcgtaccca
aacattccgcatctacgagggtggccgatggtggagaccaccggcatgtgaagctgctat
agaagctgttgagaagaaaaaacaatcaaaattttcttcctcagcagcagaggatgcaag
tccacagaacgcggcagcaagccaagtgccgaatcctgcgactgcagtgaaggctgcacg
aggcactgccgtgcttcctgcacattggacgcaggaggacatcgacgaggagcgtgaacg
tcagagactagaggaacgagcaacgcaggaacgccagaagcgtgaccggaaccggtccat
tgctggaggtaaacgcctcagcgatgaggactggtctcagcttgagcagctcctgcggaa
tgtctccagcaccagggcttcaattatggaaaccatggtgttttgccttgacaagagtga
atgggcgattgagattgcagagacgattgccgagtctctaaccattgcagaaaccgagat
tccactcaaggtggcaaggcttctggtggtcagcgacattcttcacaacaccactagctc
gcggcaagcagcttggacgtaccgcagagagttcgaaaagtccttgcccgatatttttga
gcagtttgagatcggcctgcaacgatcagagagcaagctgcaggtctcgcagacaaagga
tcagatcgtaagattgctcaaagtctgggaggattggggtttgttcgccccgcaatatct
tcgcggtcttgaggctgcggtgatcattggcgtgagaagactcaggttgctctccaataa
gggcgacctgtctcgcgagcctgcttggttagagccgaaactggctgattggagacggca
acatttctcacagttggagaagatgtgccgcacccgtggcttgagatgctcgactgcgca
ccttgagcccaccaagcagcaaagcctcgaggaagcacgcaaggagtggctgattgaccg
cttggtcacctacgagctacttgcgtatgacaaggaacaggcaagactccagcaagcaaa
ggaggatgctgcaaacaagctttcgaggcggagaagcaagtatgcaatggatgacattga
cggtgaggactgtggagatggctttccgatggatgagggtgagctggatggtgagccaat
cgatctatccacgccaggggacatctacaacgcagtagaaatggccaagcaggctccaga
ggcgttggcaagctaccttggcactgctagtgctggtgcagtgcttggcagcgtgatgaa
ctccagccctgcagcttccgcagcagaagaggttgtaagtgtcatcagctccgaggaagc
agcagaggcagctgatgacaaggaaatgctggatgtccagcaaagttcagctcaagagac
aacagaggcttcccagccagagttatccctttgtgtcgctttgggccgctctgtggtggc
catgacaactgaagattcaaagcaacgtgctgcttacagcggccggcaaagtacgtcaac
cagaaatccgcacacagcctccaaagctgtagacgtcaaagcactggccaagcttagtat
agaggacagggttttggcacagtggcgtgctgcttgtggctgccctatctctgatgaggc
gaagacccaattccgcatagagtgcttggggaggaccttcaatttggcggatgtcaggct
gtggcagaaccatgtgccggggaaaggcagccaggcttctatctacttggagttcttttt
tgatggctccccagatgaactcgaagatcaagaggaggcccgacaaagttggttgctctc
acgtaaacgatggttgctgacaccgtagccatggtgctgatgtgacgctgctattgttca
tgcctccaaagtacttgacgttgaggtggtttacttacgagcatcgctccaaagcaaatg
tgcattttcaggttcgggctcaagaccagtccgagcagaagcataaacatccgattaaac
c

All links

Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (611)   
   KEGG ORTHOLOGY (1)   
   RefGene (609)   
   OC (1)   
Protein domain (5)   
   Pfam (5)   
All databases (620)   

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