KEGG   Streptococcus macedonicus: SMA_0616
Entry
SMA_0616          CDS       T01674                                 
Name
(GenBank) Cold-shock DEAD-box protein A
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
Organism
smn  Streptococcus macedonicus
Pathway
smn03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:smn00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    SMA_0616
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:smn03019]
    SMA_0616
   03009 Ribosome biogenesis [BR:smn03009]
    SMA_0616
Enzymes [BR:smn01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     SMA_0616
Messenger RNA biogenesis [BR:smn03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     SMA_0616
Ribosome biogenesis [BR:smn03009]
 Prokaryotic type
  rRNA helicases
   SMA_0616
SSDB
Motif
Pfam: DEAD Helicase_C ResIII CMS1 Helicase_RecD
Other DBs
NCBI-ProteinID: CCF01907
Position
617942..619522
AA seq 526 aa
MKFTELNLSENILAAVEKAGFVEPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL
DKIDTNRNLVQALVIAPTRELAVQGQEELFRFGREKGVKVRSVYGGSSIEKQIKALRSGA
HIVVGTPGRLLDLIKRKALKLDHVETLILDEADEMLNMGFLEDIEAIISRVPETRQTLLF
SATMPEAIKRIGVKFMKNPEHVKVAAKELTTDLIDQYYIRVKEQDKFDTMTRLMDVDPPE
LSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNIDILVATDVAA
RGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKHGQSITFVTPNEMGYLSIIENLTKK
RMKGLKPATADEAFKAKKKVALKKIERDFADEAIRANFDKFKGDAVKLAAEFTPEELALY
ILNLTVKDPDTLPKVEIAREKPLPFKPSGGGFNNRKAGRGNGRGRDNRRGGRSDRKRDDR
DNNGYRDFKRTSSKNKRDFQNKDNKDPYRTSSEKKTGFVIRNKGER
NT seq 1581 nt   +upstreamnt  +downstreamnt
ttgaaatttacagaacttaacttatcggaaaatatccttgctgctgtagaaaaagcaggc
tttgttgagccatctccaatccaagaattaacgattcctttggctttggaaggtaaggat
gttatcggacaagcgcaaaccggaacagggaaaacagcagcctttggcttgccaactttg
gacaaaattgatacaaatcgtaatcttgttcaagccttggttatcgcaccaacacgtgaa
ttagctgttcaaggacaagaagaattgttccgctttggtcgtgaaaaaggtgtgaaagtc
cgttccgtttacggtgggtcaagcattgagaaacaaattaaggcacttcgttcaggagct
cacattgtagtgggaacaccagggcgtttgcttgatttgattaaacgtaaagctttgaaa
cttgaccatgttgaaacattaatccttgatgaagcagatgaaatgcttaacatgggattc
ttagaagatattgaagcgattatcagccgtgttcctgaaacacgtcaaacccttcttttc
tcagcaactatgccagaagctattaaacgtattggggtgaaatttatgaaaaaccctgaa
catgttaaagttgctgctaaagaattgactactgatcttattgaccaatactatattcgc
gttaaagaacaagataaatttgatacaatgacacgtcttatggacgttgacccacctgaa
ttgtcaattgtctttgggcgtacaaaacgtcgtgtggatgaattgacacgtggattgaaa
ttacgtggctatcgtgccgaaggtattcacggtgaccttgaccaaggtaaacgtctccgt
gttcttcgtgatttcaagaatgacaatattgatatcttggttgcgactgacgttgcagcg
cgtggtcttgatatttcaggggtcacacacgtttataattacgatattccacaagaccca
gaaagctatgttcaccgtattggacgtactggacgtgctgggaaacatggtcaatcaatc
actttcgtaacaccaaacgaaatgggatatttgtcaattattgaaaatttgacgaaaaaa
cgcatgaaagggttgaaaccagcgactgctgatgaagcctttaaagcgaagaaaaaagtt
gcgcttaagaaaattgaacgtgattttgcagatgaagcgattcgtgcaaactttgacaaa
tttaaaggtgatgctgttaaattggcagcagaatttacgccagaagaattggcattgtac
atcttgaacttgaccgtaaaagacccagatacacttccaaaagtggaaattgcgcgtgaa
aaaccattaccatttaaaccatcaggtggtggctttaataatcgcaaagctggtcgtggt
aatggtcgtggtcgtgataatcgccgtggtgggcgttcagacagaaaacgtgatgaccga
gacaataacggctatcgtgatttcaaacgcacgtcatctaagaacaaacgtgatttccaa
aacaaagataacaaagacccatatcgcacatcaagtgaaaagaaaacaggatttgttatc
cgtaacaaaggtgaaagataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (5)   
   Pfam (5)   
All databases (15)   

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