KEGG   Streptococcus macedonicus: SMA_0788
Entry
SMA_0788          CDS       T01674                                 
Name
(GenBank) Zn-dependent hydrolase, RNA-metabolising, CPSF 100 kDa analog
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
smn  Streptococcus macedonicus
Pathway
smn03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:smn00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    SMA_0788
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:smn03019]
    SMA_0788
Messenger RNA biogenesis [BR:smn03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     SMA_0788
SSDB
Motif
Pfam: RNase_J_C RMMBL Lactamase_B Lactamase_B_2 Regulator_TrmB
Other DBs
NCBI-ProteinID: CCF02079
Position
785666..787327
AA seq 553 aa
MSDIKIIALGGVRENAKNLYVVEVNDSIFILDAGLKYPEIEQLGVDEVIPNIDYLVENKK
RVQGIFLTHGHADAIGALPYILSEFKVPVFGSPLTIELAKLFVKKNNNVKKFNNFHVIDA
ETEIEFVDATISFFKTTHSIPESLGIVVGTDEGNIVYTGDFKFDQAARKYYRTDLSRLTE
IGREGVLALLSDSANATSNVLTASESEVAAEMDSIIADAEGRVIIAAVASNLVRIQQVFD
SAADYGRRVVLTGFDAENIVRTAIRMKRLRLVDEKLIVKPKDMHKFEDHELIILEAGRMG
EPINGLQKMALGRHRYVQIKEGDLVYIVTTPSLSKEAAVARVENLIYKAGGVVKLITQTT
NVSGHANARDLQLMINLLQPKYLFPVQGEYRNLATHAELAQEVGMYPENIYIVKRGDVMV
LGKDGFNHEGSVPAGDVMIDGNAIGDVGNIVLRDRKVLSEDGILIVALTVNKREKKIVSK
AKIHTRGFVYVKKSRDILRESAELVNQTVENYLAQESFDWGELKGAVRDDVAKFLFDQTK
RRPAILPVVMEVR
NT seq 1662 nt   +upstreamnt  +downstreamnt
atgagcgatattaaaattattgcccttggaggtgtgcgcgaaaatgcgaaaaacctctat
gtggtagaagttaatgactctattttcattttggatgctggacttaaatatcctgaaatt
gaacaattgggtgtagatgaagtcattccaaatattgactacctagttgaaaataaaaaa
cgtgtgcaaggaattttcttgacgcatgggcacgcagacgctatcggagctttgccttat
attctatcggaatttaaagtgccagtgtttggctcaccgttgacaattgagttagcgaag
ctttttgttaagaaaaataacaatgttaaaaaatttaataatttccatgttattgacgca
gaaactgaaattgaatttgtagatgcgacaatttcattctttaaaacaactcactcaatt
cctgaaagtttggggattgttgttggtacagatgagggaaatattgtttatacaggcgac
ttcaaatttgaccaagctgcccgtaaatattaccgtacagacttgtctcgtttgactgaa
attgggcgtgaaggcgttttagctcttctttctgattctgctaatgcgacaagtaatgtt
ctgacagctagcgaatcagaagttgctgctgagatggatagcattatcgcagatgctgaa
ggtcgtgtgattattgcagccgtagcttctaacttggttcgtattcagcaggtatttgat
tcagccgcagactatggtcgtcgtgttgttttaactggttttgacgctgaaaatattgtc
cgcacagccattcgtatgaaacgcttgcgtttggttgatgaaaaattgattgtcaaacca
aaagacatgcacaagtttgaagaccatgaattgattattcttgaagctggtcgtatgggt
gaaccgattaatggtttgcaaaaaatggcgcttggacgtcaccgttatgtgcaaattaag
gaaggcgaccttgtttacatcgttacaacgccaagtctttcaaaagaagcagctgttgcg
cgtgtcgaaaacttgatttacaaagctggtggtgtggttaaacttatcacacaaacaacg
aatgtttcaggtcatgccaatgcgcgtgatttgcagttgatgattaaccttcttcaacca
aaatatttgttcccagttcaaggagaataccgtaacttggcaacgcatgctgagttagcg
caagaagttggtatgtatccagaaaatatctacatcgtcaaacgtggtgatgtcatggtt
cttggtaaagatggctttaatcacgagggaagtgtcccagctggtgatgtgatgattgat
ggaaatgcgattggtgacgttggtaacattgttcttcgtgaccgcaaagtcttgtcagaa
gatggtattctcattgttgccttgactgttaataaacgcgaaaagaaaattgtttcaaaa
gctaaaattcacacacgtggttttgtctatgtcaagaaaagccgtgatattttgcgtgaa
tcagctgaattggttaatcaaactgttgaaaattacttggcacaagaaagctttgactgg
ggtgaattgaaaggagctgtccgcgatgatgtggcaaaattccttttcgaccaaaccaaa
cgtcgccctgctattttaccagtagttatggaagtgagataa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (5)   
   Pfam (5)   
All databases (12)   

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