KEGG   Selaginella moellendorffii: SELMODRAFT_109010
Entry
SELMODRAFT_109010 CDS       T01496                                 
Name
(RefSeq) hypothetical protein
  KO
K12580  CCR4-NOT transcription complex subunit 3
Organism
smo  Selaginella moellendorffii
Pathway
smo03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:smo00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    SELMODRAFT_109010
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:smo03019]
    SELMODRAFT_109010
Messenger RNA biogenesis [BR:smo03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     SELMODRAFT_109010
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     SELMODRAFT_109010
SSDB
Motif
Pfam: Not3 NOT2_3_5_C DUF5965
Other DBs
NCBI-GeneID: 9653728
NCBI-ProteinID: XP_002978422
JGI: 109010
UniProt: D8S593
Position
Unknown
AA seq 824 aa
MGATRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTENANQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKVAASYEQALVDARKLIEREMERFKVCEKETKTKAFSKEGLGQLPK
TDPKEKAKAETREWLNNMVDELNSGIDAFETEMEGLAVKKGKTRPPRLIHLEESTARHKS
HVMKLELILRLLDNDELSPEQVNDVKELVEDYLERNQEDFDEFADVDELYSQLPLDKMEA
MEALDLAPNVASALVVAAAAAAAAAAAVAAQVPPPLQPVDDITLEDTSARTSPVPITASS
LSPTGSALLQTTGSDVTSSPSASGITQRTVATPPGLIPRPTAKGAVLQSSPAKVKEDEVT
SLAGRRVGPGIGDGGLSRSFGRQTAVPASPVAQPSPTVSSSPTVPEAAKRNIADDRATSG
VAPQLSPLSTPNKAPFGGKVGDSSPTSEAPGTPETAIGNRLGQWRESSQFHGRPEIVPDQ
KQKFLQKLQQANQQTQHLPPHLTSPVQKQTPQPSSLLHQVTRYWFWKNLLKVLLASGSFA
AAATTAAFSSKYAISYNAVPQPDAIQTRTVEQQSPLAAKLADDNTTEANVPFPRNLSLSE
DDLKNADTFDVPVGGPGTLAELSQLSRDADFTPGQQVPSTPTSSVPGVIGRKSNTELGAI
GDNLSAASSSMAHDSVYNLQMLEAAYRHLPLPKDSERPRNYTPRNPAITPPSYPQAPAQS
IIDNPALWEKFEVDVLFYAFYYHQGTYQQYLAARELKKHSWRYHKKYNTWFQRHEEPKVT
TDEFEQGTYVYFDFHIVDDIQQGWVQRIKTEFTFEYSFLEDELV
NT seq 2475 nt   +upstreamnt  +downstreamnt
atgggcgcgacgcggaagctccagggcgagatcgatagagttctcaagaaggtccaggag
ggcgtggatgtcttcgacagcatctggaataaggtgtatgataccgagaatgcaaatcaa
aaggagaagtttgaggccgatctcaagaaggaaatcaagaagctacagcgatacagggac
cagattaagacgtggattcagtccagtgaaatcaaggacaagaaggtagcagcgtcttac
gagcaggcgctggtggatgcccggaagctcattgagcgagagatggaacgattcaaagtt
tgcgagaaagaaacgaaaacgaaggcgttttcgaaagaaggtctaggccagcttccgaaa
actgatccaaaagagaaagcaaaagccgaaacacgagaatggttaaacaatatggtggat
gagttgaattcgggtattgatgcgtttgagacagagatggaagggctggcagtgaagaag
gggaaaactcggcccccccgcttgattcacttagaagagtctactgcccgtcacaaaagt
catgtcatgaaactagaactcattttgcgacttttggacaatgacgagctaagcccagag
caagtaaatgacgtcaaagagcttgtggaagattacctcgaaaggaatcaggaggatttt
gatgaattcgcagatgtggatgaactttatagtcagcttcctcttgataaaatggaggcc
atggaagctctggaccttgctccgaatgtggcttcagcacttgtggttgctgccgctgcg
gcagctgcagcagctgctgccgttgctgctcaagttcctccacctttacagcccgtggat
gatattacattggaagacacatccgcacgaacatctcccgttccaatcaccgcaagctcg
ctgtcacccacaggatcggccttactgcagactactggaagcgacgtaacttcatctcca
agcgcttctggtatcacgcaacggactgtggcaacacctcctggtttgattccacggcca
acagccaaaggtgcggtcttgcaatcatcacctgcaaaagtcaaggaggacgaggtgacg
agccttgccgggcgacgagtaggaccaggtattggagatggaggactttctcgaagcttt
ggcaggcaaacagctgttccagcttctcctgtcgctcaaccttccccaacagtctcgagc
agtccaacagtgccggaagctgcaaaacggaatatagctgacgacagagccacttctgga
gtcgcaccgcagctcagtcctttgagcacgccgaataaagctccttttggaggaaaggtt
ggagattccagtccgacaagtgaggctccgggaaccccagaaacagccattgggaataga
cttggccagtggagagaatcgagccagttccatggaagaccagagattgttccagatcaa
aaacaaaagttcttacagaagttgcagcaggccaatcaacagacacaacatctccctcca
catcttacaagtccagttcaaaagcaaacgccccaaccatcctctttgcttcatcaggta
accagatactggttttggaaaaacttgctcaaggtattactcgcatcaggctcttttgca
gcagcagcaacaacagcagctttctcctctaagtacgcaatctcctacaacgccgtgccc
caacctgatgcgattcaaacaaggactgtggagcagcagagtccacttgcagctaaactt
gcagacgataacacgactgaagccaatgtaccattccccagaaatttatctctgagcgaa
gatgacttgaagaatgcagacaccttcgacgttccagttggtggcccaggaacgctagcg
gaacttagccagttgtcgagggatgcagatttcacgccagggcaacaagtcccgtcaaca
ccaacatcatcagtacctggtgtgatcggtcggaagagcaacacggaacttggagccata
ggagacaacctctcagctgcaagtagcagtatggctcacgacagtgtgtacaatttgcag
atgctagaagctgcttatcgccaccttccgcttccaaaagactcagaacggccacgcaac
tacaccccgaggaacccagctatcactccgcctagctatcctcaagcaccagcccaatcc
atcatcgacaaccctgcgctttgggagaagtttgaggtggacgtcctgttctatgcattc
tactatcatcagggaacgtaccagcagtatctagccgcaagggagctaaagaaacattcg
tggagatatcacaagaagtacaacacatggttccagcgccacgaggagccgaaagtcaca
acagacgaattcgagcaaggcacatacgtttacttcgacttccacatcgtggatgatatt
cagcaaggctgggtccagagaatcaagaccgagtttacattcgaatacagcttcctcgaa
gacgagctggtgtaa

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (45)   
   KEGG ORTHOLOGY (1)   
   RefGene (39)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
   PGDBJ (1)   
Protein sequence (6)   
   UniProt (1)   
   RefSeq(pep) (5)   
DNA sequence (5)   
   RefSeq(nuc) (5)   
Protein domain (3)   
   Pfam (3)   
All databases (63)   

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