KEGG   Selaginella moellendorffii: SELMODRAFT_171333
Entry
SELMODRAFT_171333 CDS       T01496                                 
Symbol
COP1-1
Name
(RefSeq) hypothetical protein
  KO
K10143  E3 ubiquitin-protein ligase RFWD2 [EC:2.3.2.27]
Organism
smo  Selaginella moellendorffii
Pathway
smo04120  Ubiquitin mediated proteolysis
smo04712  Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:smo00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    SELMODRAFT_171333 (COP1-1)
 09150 Organismal Systems
  09159 Environmental adaptation
   04712 Circadian rhythm - plant
    SELMODRAFT_171333 (COP1-1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:smo04121]
    SELMODRAFT_171333 (COP1-1)
Enzymes [BR:smo01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     SELMODRAFT_171333 (COP1-1)
Ubiquitin system [BR:smo04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    SELMODRAFT_171333 (COP1-1)
  Multi subunit Ring-finger type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     SELMODRAFT_171333 (COP1-1)
SSDB
Motif
Pfam: WD40 zf-C3HC4_2 zf-C3HC4 zf-C3HC4_3 WD40_like zf-RING_2 zf-RING_UBOX eIF2A zf-RING_5 U-box TAF1C_beta-prop zf-C3HC4_4 zf-rbx1 zf-Nse Tantalus DUF4349
Other DBs
NCBI-GeneID: 9646461
NCBI-ProteinID: XP_002970454
JGI: 171333
UniProt: D8RGE3
Position
Unknown
AA seq 646 aa
MSFSSEQQQQQQQQQGPRLLADKDFQCPICIQTMKDAFLTACGHSFCYMCIITHLNNKKN
CPCCGVYLTSSQLYPNFLLNKILKKVATSQISCASPTEQLRFALQQGVDVPLKEIDSLLV
LLSDKKRKAEHEEAEVNMEVLLEFLQRSRQQKMEELSEIQGDLQSLREDISAVEIQRQEL
LKSRQTSSLKWRFLLDCPALDCAAQENPYNRPAVPLHRVGQAGAALLGGEQRKATRGPLV
KKNGGISNGTSDFEPLPCKTAKKKRMLNQFEDLQDCYLNKRRRDRQMKKLEAIVKKEKDE
EGCGGFNQPSGLEDFRSILAGFTRYSRLELVAELRHGDLFHSSNIVSSIEFDRDDELFAT
AGVSRRIKIFEFATVVNELADVHCPVAEMSTRSKLSCLSWNKYIKGQIASSDYEGTVTVW
DVNSCQSVMEYEEHERRAWSVDFSRTDPTMLVSGSDDGKVKLWCTRQETSVLNIDMKANI
CCVKYNPGSSNFVAVGSADHHIHYYDLRNSKSPLHVFSGHRKAVSYVKFVSPNELASAST
DSTLRLWDVQKSSQIRSLTGHANEKNFVGLTVNSEYIACGSETNEVVVYHKEVPKPAARH
RFTNHDSEESDDDVFHFISAVCWKSDSPTMLAANSQGTIKVLVLAP
NT seq 1941 nt   +upstreamnt  +downstreamnt
atgagtttctcgtccgagcagcaacagcagcaacagcagcagcaagggccgcggctgttg
gcggataaggatttccagtgcccgatttgcatccagacgatgaaggatgcgtttctcacg
gcttgcggccacagcttttgctacatgtgtatcatcacgcacctcaacaacaagaagaac
tgcccgtgctgtggagtctacctcactagcagtcagctttaccccaattttctattgaac
aaaatacttaagaaggttgctacgtcgcaaatctcgtgtgcgtccccgacagagcagctt
cgttttgctctacaacagggggtcgacgttccactcaaagagatcgattcattgctggtt
ttgttgagcgataagaagcgaaaagccgagcacgaggaagccgaggtgaacatggaggtt
cttctcgagtttttgcagagatctaggcagcaaaagatggaagaactttctgagattcaa
ggggacttgcagtcgctgagggaggacatctctgctgttgagatccagaggcaggagctg
ctcaaatcgagacaaacaagctcgctgaagtggcgctttcttcttgactgcccggctctc
gactgtgcggctcaagagaacccgtacaaccgtcctgcggttcccttgcatcgtgtcggc
caagcaggggcagccttgctcggtggagaacaaaggaaagcaacgagaggtcctctcgtg
aagaagaatggtggcatttcaaatggtacctctgactttgaaccgctgccttgtaagacc
gcaaagaaaaagaggatgctaaaccagtttgaagacttgcaagattgttacttgaataag
agacgacgtgatcgtcagatgaaaaagcttgaagccattgttaaaaaggagaaagacgaa
gaaggctgtggtgggtttaatcaaccttcaggccttgaggactttagatctattctcgct
ggcttcaccagatatagtcgtttggagctggtggctgagctacgacacggagacttattt
cattcttctaacattgtttcaagtattgaatttgacagggacgacgaactctttgccact
gcaggagtttcgcggcgaatcaaaattttcgaatttgcaacggttgtcaacgagcttgca
gacgtccattgtcctgttgccgagatgtctacgcggtcaaagctaagctgcctaagttgg
aacaagtacatcaagggacaaatcgcgagcagcgattatgaaggcactgtaactgtttgg
gatgtaaattcttgccagagtgtcatggagtacgaagagcacgagagaagagcctggagc
gtcgatttctccaggacggacccgacaatgctagtgtctgggagtgacgacggaaaggtc
aagctgtggtgcaccaggcaggagacaagtgtcctgaacattgacatgaaggcaaacatt
tgctgtgtcaaatacaatcccggatctagcaattttgtcgcggtgggctcggccgatcat
catatccactattacgatctccggaactccaagtcgcctctacatgtctttagtggtcac
cgaaaagccgtctcgtatgtaaagtttgtatcccccaacgagttggcctcggcttccact
gacagtacactgcgattgtgggacgtccagaagagctcccagatacgcagcctcacaggc
catgctaacgagaagaactttgtaggcttgacagttaacagcgagtacattgcgtgcggt
agtgaaacgaacgaagtcgtggtgtatcacaaggaagttcccaagccagcagcaaggcac
agattcacaaaccatgactcggaggagagcgacgacgatgtgttccacttcatcagtgct
gtgtgctggaagagcgatagcccaacgatgcttgcggcaaacagccaagggacgatcaag
gttctggtgcttgctccgtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (27)   
   KEGG ORTHOLOGY (1)   
   RefGene (21)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
   PGDBJ (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (16)   
   Pfam (16)   
All databases (53)   

Download RDF
DBGET integrated database retrieval system