KEGG   Selaginella moellendorffii: SELMODRAFT_171821
Entry
SELMODRAFT_171821 CDS       T01496                                 
Name
(RefSeq) hypothetical protein
  KO
K12818  ATP-dependent RNA helicase DHX8/PRP22 [EC:5.6.2.6]
Organism
smo  Selaginella moellendorffii
Pathway
smo03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:smo00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    SELMODRAFT_171821
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:smo03041]
    SELMODRAFT_171821
Enzymes [BR:smo01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     SELMODRAFT_171821
Spliceosome [BR:smo03041]
 Complex C
  Other components
   Step II factors
    SELMODRAFT_171821
SSDB
Motif
Pfam: OB_NTP_bind Helicase_C HA2_C HA2_N DEAD AAA_22 AAA_19 SLFN-g3_helicase AAA_30 AAA_16 Flavi_DEAD cobW nSTAND3 ABC_tran PhoH T2SSE SRP54 NACHT AAA_29 Herpes_ori_bp AAA_23
Other DBs
NCBI-GeneID: 9641586
NCBI-ProteinID: XP_002970991
JGI: 171821
UniProt: D8RIU2
Position
Unknown
AA seq 698 aa
MAELPIRRESECIVSAVRDNSVTVVIGETGSGKTTQLSQILHDAGFTADGKCIAITQPRR
VAAVSVARRVAHEMGVTLGEEVGYAIRFENRTSSRTFIKYLTDGCLLREFLVDIELSQYS
VVILDEAHERTLNTDILLGLLKRLVALRKPELKLIVTSATLDGHKISKFFGGCPVVNIPG
KLFPVEIMYSTEQPVSYVESAVETAIEIHAKEPPGDILVFMTGQEEIEKVIVKLEHRVQT
LEEGSCMDALVLPLHASLPPEFQARVFAPAPSNCRRIIVATNVAETSLTVDGVVYVIDPG
FVKQRQYNPTTGMDALCVVQISRVQATQRAGRAGRTCPGKCYRLYSSSNFEQDFPAVTVP
EIQRSSLAGALLHLKSLEIPNLDVLNFEYLDAPSVASLEDALRQLYLIDAITSKGDVTSL
GKRMAGLPLEPSLARALIAAEDLGCLEDALVLAAMLSCDSVFYQAPKKEKKEQSAVHQDL
PTGDGFGDHIQLLQIYEKWRRVDYDFEWCKEHGLQIRAMKFARDIRKQLSLIMQGKSDFR
KRKDPAYKNLRKAFAEGFANRLAHRLPNHNGYRTLAQSSHLVQVHPSACKMEIDADGLLP
EWILYHELLTTTRPYIKKICVIDGRWAQPTLVKLQDLDVISLSGRLPEESRTHLDESSET
KPASAVTQPANKEAVDAARERYMARKKARTNPARLSAR
NT seq 2097 nt   +upstreamnt  +downstreamnt
atggcggagctcccgatccggcgcgaatcggagtgcatcgtgagcgctgtgcgcgacaac
agtgtcacggtcgtgatcggcgagacgggatcgggtaagacgacgcagctttcgcaaatc
ctccacgatgcagggttcacagccgacggcaaatgcatcgccatcacgcagccccggcgc
gtggcggccgtgtccgtcgctcggcgcgtcgctcacgagatgggagtgacgctgggcgag
gaagtgggatacgccattcgcttcgagaacaggacgtcgagcaggaccttcatcaagtat
ctcacggacggctgccttctccgggaattcctagtcgacatcgagctcagccagtactcg
gtggtgatcttggacgaagcccacgagagaacactcaacaccgacatccttctcggcttg
ctcaagcgcctggttgccttgagaaagcccgagcttaagctgatcgttacctcggcaact
ttagatggtcacaagatctccaagttcttcggtggctgccccgttgtcaacatccctggg
aagctcttcccggtggagatcatgtatagcaccgagcagccagtgagctacgtggagtcg
gcggtggagaccgcgatagagatccacgccaaggagcctcctggtgatatcctcgtgttc
atgacgggccaggaggagatagagaaggtgatagttaagctggagcacagggtccagact
ctggaagaaggctcgtgtatggacgcacttgttcttcctctccatgcttcgcttccaccg
gagtttcaggcccgggttttcgccccggctcctagcaactgccggaggatcatcgttgct
acaaatgtcgcggagacgtctctcacggttgacggtgttgtctacgtgattgatccaggc
ttcgtgaagcagagacagtataatcccaccacgggcatggacgctttgtgcgtcgttcag
ataagcagggttcaagcaacgcagcgagctggtcgagcaggacggacgtgtcctggtaaa
tgttacaggctctactcgagctccaacttcgagcaagactttccggccgtgacggtaccg
gagattcagaggtcgtcgctagctggggcgctcctccatctcaagtcgctggagattcca
aacctcgacgtgctgaacttcgagtacctggatgccccgtcggtggcatcgctggaggat
gctttgaggcagctatatctcattgacgcaatcaccagcaaaggcgacgttaccagcctt
ggcaagcggatggctgggcttccgctggaaccgtctctagcgagagctttgattgctgcg
gaggatctcggatgcctggaagacgctctagtactggctgcgatgctctcttgcgactcg
gtgttttaccaagctccaaagaaggagaagaaagaacaatcagctgttcaccaggacttg
ccaacaggagacggttttggcgatcacattcagctgctacagatctatgagaagtggaga
agggtggattacgacttcgagtggtgcaaagagcacggtttgcagataagagcgatgaag
ttcgcgagggacatacggaagcagctcagcctgatcatgcaagggaaaagtgacttcagg
aagcggaaagatccagcgtacaagaacttacgcaaggcttttgccgaaggctttgcgaac
aggctggctcatcggcttcccaatcacaacgggtaccgcactctggcacaaagctctcac
ctcgtgcaagttcatccttcagcttgcaagatggaaattgatgcggacggactgctaccc
gagtggattctttaccacgagttgctaacaacgacacggccgtatatcaagaagatttgc
gtcatcgacggtcgctgggctcaaccgacgctggtgaagcttcaagacctggacgtcata
agcttgagtggcaggctgccagaagagtcaaggacgcatttggacgaatcgtcggagact
aagcccgcaagtgccgtcactcaaccagctaacaaagaggcggtggacgctgctcgagaa
cgatatatggctcgcaaaaaggccaggaccaatccggcacggctttcagcccgctga

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (15)   
   KEGG ORTHOLOGY (1)   
   RefGene (9)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
   PGDBJ (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (21)   
   Pfam (21)   
All databases (46)   

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