KEGG   Selaginella moellendorffii: SELMODRAFT_172903
Entry
SELMODRAFT_172903 CDS       T01496                                 
Name
(RefSeq) hypothetical protein
  KO
K03010  DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
Organism
smo  Selaginella moellendorffii
Pathway
smo03020  RNA polymerase
smo03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:smo00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    SELMODRAFT_172903
  09124 Replication and repair
   03420 Nucleotide excision repair
    SELMODRAFT_172903
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:smo03021]
    SELMODRAFT_172903
   03400 DNA repair and recombination proteins [BR:smo03400]
    SELMODRAFT_172903
Enzymes [BR:smo01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     SELMODRAFT_172903
Transcription machinery [BR:smo03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Core subunits
     SELMODRAFT_172903
DNA repair and recombination proteins [BR:smo03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      SELMODRAFT_172903
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_2 RNA_pol_Rpb2_7 RNA_pol_Rpb2_4 RNA_pol_Rpb2_3 RNA_pol_Rpb2_5 RNA_POL_M_15KD Zn_Tnp_IS1595
Other DBs
NCBI-GeneID: 9651557
NCBI-ProteinID: XP_002972363
JGI: 172903
UniProt: D8RN68
Position
Unknown
AA seq 1178 aa
MDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESSEIEIKPESQHN
PGRNNEYSGETTFKIKFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYADIIKY
VTRKGEDGEEDTEQEELPKVFIGKVPIMLRSSYCTLYQNSDKDLTELGECPYDQGGYFII
NGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPASSMFVRMLSRAGAK
AGSSGQYIRATLPYIKQEIPIIVVFRALGFVADKDILEHICYDFSDTAMMELLRPSLEEA
FVIQNQQVALDYIGKRGSTVGVTREKRIKYAKDILQKEMLPHVGVGEYCETKKAYFFGYI
IHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGSLFRQLFRKLTKDVRAYLQKCVDNGKE
VNLAYAVKAKTITSGLKYSLATGNWGQANSGNARAGVSQVLNRLTYASTLSHLRRLNSPI
GREGRLLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMAYITVGSAANPILVFLEEW
STENFEEISPAVIPNATKIFVNGAWVGIHREPEHLVKTLRQLRRQVDVNTEVGVVRDIRL
KELRLYTDYGRCSRPLFIVEKQRLLIKKSDIRALQQKEAGENGWHELVSKGFIEYVDTEE
EETTMISMTISDLVNARLNPEEAYSDTYTHCEIHPSMILGVCGSIIPFPDHNQSPRNTYQ
SAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACY
SGYNQEDSVIMNQSSIDRGFFRSIFYRSYRDEEKKAGTLVKEEFERPNRETTTGMRHGSY
DKLDDDGIAPPGTRVSGEDVIIGKTTPLAQDETGTQAQRYSKRDQSTCLRHSESGMIDQV
LLTTNADGLRFVKTRVRSIRIPQIGDKFSSRHGQKGTIGMTYTQEDMPFTQEGITPDIIV
NPHAIPSRMTIGQLIECIMGKVAALMGKEGDATPFTDVTVDNISKALHKCNYQLRGFETM
YNGHTGRRLSAMIFIGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGE
MERDCMIAHGAAHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNTFECRSCKNKTEIVQ
VHIPYACKLLFQELMAMAIAPRMFMKEVKKLKGHVKKV
NT seq 3537 nt   +upstreamnt  +downstreamnt
atggatgaggaggaggaaatcacacaggaggatgcctgggccgtcattagtgcctacttc
gaggagaaggggctagtgcgccagcagctcgactcgttcgacgagttcatccagaacacg
atgcaggaaatcgtggatgagtcgtcggagatcgaaattaagcccgagtcgcagcacaac
cctggccggaataacgaatattccggagagaccactttcaagatcaagtttggacagatt
tatctgagcaagcctatgatgaccgagtctgatggagaaaccgcaactttgttcccaaaa
gctgcccggctcaggaatctaacgtactcggctcctttgtacgccgatatcatcaagtat
gtcactcgaaaaggagaggacggcgaagaagacaccgagcaggaagagctgccgaaagtc
ttcattggaaaggttcctatcatgcttagatcgagctactgtacattgtatcagaactct
gataaagaccttactgagcttggcgagtgtccatacgatcaaggaggctactttatcatc
aacgggagtgagaaggtcctcattgcgcaagaaaagatgagtaccaatcacgtctacgtg
ttcaaaaagaggcagccaaacaaatatgcttacgttgctgaggttcgttctatggcggag
tcccagaacagacccgcgagcagtatgttcgtccgaatgctttcacgagccggagccaaa
gcggggtcttctggccaatatattcgagcaacactgccttatatcaaacaagaaatccca
atcatagtggtttttcgagcacttggattcgtggctgataaagacatcctggagcatatc
tgttatgactttagcgacacggccatgatggaattgctaaggccatctttggaagaggca
ttcgtcatacagaaccaacaagttgctttggactatattggcaaaagaggctccactgtg
ggtgttaccagggagaagcgtatcaagtatgcaaaagacattctacaaaaagaaatgtta
ccgcacgttggagtcggggaatattgtgagacgaagaaagcgtacttttttggatacatc
atacatcgtctattattatgtgcgttgggccgtcgtgctgaagacgatcgagaccattat
gggaacaagcgtctagatcttgctggtccgctgcttggtagtctgttccggcagttgttc
aggaagctgactaaagatgtccgagcctatctacaaaagtgcgtagacaatgggaaggaa
gtaaatcttgcatatgctgtcaaagccaagacaatcactagtggattgaagtattccctt
gcgactggaaactggggacaagcgaactcaggcaatgcacgagcaggagtgtcacaggtt
ctcaatcgtctgacgtatgcctcaacattgtcacacttgcgaagattaaattctccaatt
ggacgtgaaggtaggcttctggcaaagcctcgtcagcttcataattctcactggggtatg
atgtgtcctgccgaaactccggaaggtcaagcatgcggtttggtaaaaaatttggcacta
atggcttatatcaccgtcgggtcagctgccaatcccatactggtttttctggaagagtgg
agtactgagaatttcgaggaaatttcaccagcagtaatcccaaatgcaactaaaatcttt
gtgaatggtgcatgggttgggatacacagagagccggagcacttggttaaaacgttgcgg
cagctgcgtcgacaggtcgatgtgaatacagaagttggtgttgtaagagacattcggctc
aaggagctccggttgtacacagactatggaagatgcagccggcctctctttattgttgag
aaacaaaggctgctgataaagaagtcagatatcagagcactgcagcaaaaggaagctgga
gaaaatggatggcatgagctggtatccaaaggatttattgagtacgttgacaccgaggaa
gaagaaacaactatgatatccatgactatttcggatcttgtcaatgctcgattgaatccc
gaagaggcatattcagatacttatacacattgcgaaatccacccgtccatgattttgggc
gtctgtgggtcgattattcccttccccgaccataaccagtctcctcgtaatacataccaa
tcagctatgggaaagcaagctatgggtatatacgtgacaaactaccaactacgtatggat
acccttgcttatgtgttgtactaccctcaaaagcctcttgtgacaactcgtgctatggag
cacctgcattttcgacaacttcccgctggcattaatgctattgtggcaattgcatgctat
tccggctacaatcaagaggattcggttattatgaaccagtcatccatcgaccgcggcttt
ttccgctccatcttttatcgttcttacagggatgaggaaaagaaagctggaacgttggtg
aaagaagaatttgaacgtcccaacagggagacgacgacgggaatgcggcatggatcatat
gataagctcgatgatgatggtatcgcaccgcccggaacgagggtatctggggaggatgtg
attattgggaagaccacaccgctggcccaagacgaaactgggactcaagctcaacggtat
tcaaagagggatcagagtacgtgtctacgccatagtgaaagtggaatgatcgatcaggtg
ttacttacgaccaatgcggatggtttgcgttttgtcaagacaagggtgcgatccatacgc
atccctcaaattggtgacaagtttagtagcagacacgggcagaagggtactattggaatg
acgtacacgcaagaagacatgcccttcacacaagaaggcataacaccggatatcatcgtg
aatccgcatgctattccatcccgcatgaccattggccagctgatcgagtgtatcatgggt
aaagttgcagcgctcatgggaaaagaaggtgatgcgacgccattcactgatgtcacggtg
gataacatcagcaaagcactccacaagtgtaactatcagttaagaggcttcgagacaatg
tacaatggacacaccggtcgcagactgagtgccatgattttcatcgggccaacatactac
cagcggttgaagcatatggtcgacgataagattcactcccgtgggcgtggtcctgttcaa
atacttactcgccagcccgcagaaggtcgatcaagggacggaggccttcgttttggtgaa
atggagcgggactgcatgatcgcacacggagcagcgcattttctcaaggagcgcctgttt
gatcagagcgacgcgtatcgcgtccacgtttgcgagcattgcggtctgattgcgatcgcg
aacctgaagaagaatacgttcgagtgccggagctgcaagaacaagacggagattgttcag
gttcatataccatacgcttgcaagcttttgttccaagaactaatggctatggctatagcg
cctcgaatgttcatgaaggaggttaagaagctcaaaggacacgtaaagaaggtttaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (153)   
   KEGG ORTHOLOGY (1)   
   RefGene (147)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
   PGDBJ (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (9)   
   Pfam (9)   
All databases (173)   

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