KEGG   Selaginella moellendorffii: SELMODRAFT_180735
Entry
SELMODRAFT_180735 CDS       T01496                                 
Symbol
CUL4-2
Name
(RefSeq) ubiquitin-protein ligase, cullin 4
  KO
K10609  cullin 4
Organism
smo  Selaginella moellendorffii
Pathway
smo03420  Nucleotide excision repair
smo04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:smo00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    SELMODRAFT_180735 (CUL4-2)
  09124 Replication and repair
   03420 Nucleotide excision repair
    SELMODRAFT_180735 (CUL4-2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:smo04121]
    SELMODRAFT_180735 (CUL4-2)
   03400 DNA repair and recombination proteins [BR:smo03400]
    SELMODRAFT_180735 (CUL4-2)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:smo04147]
    SELMODRAFT_180735 (CUL4-2)
Ubiquitin system [BR:smo04121]
 Ubiquitin ligases (E3)
  Multi subunit Ring-finger type E3
   Cul4 complex
    Cullin
     SELMODRAFT_180735 (CUL4-2)
DNA repair and recombination proteins [BR:smo03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      SELMODRAFT_180735 (CUL4-2)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      SELMODRAFT_180735 (CUL4-2)
Exosome [BR:smo04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   SELMODRAFT_180735 (CUL4-2)
SSDB
Motif
Pfam: Cullin Cullin_Nedd8 SecA_SW
Other DBs
NCBI-GeneID: 9643885
NCBI-ProteinID: XP_002984123
JGI: 180735
UniProt: D8SLC9
Position
Unknown
AA seq 766 aa
MVVDVKATGHGLSVASPVTAVGLAGGSNSTGTTANLSRKKATPPQPTKKLVIKPFKDKPK
LPANFEDATWDKIRAAVSAIHVKQPVSCSLEQLYQNVEDLCLHKLSGNLYQRLQQECETH
ISAKLNALVGQSPDPVVFLSHVERCWQDHCDQMLMIRSIALYLDRTYVIQNSSVRSLWDM
GLQLFRKHLTSCPEVEHKTVTGILRLIEKERTGETVDRTLLKHLLRMFSALGTYSESFEK
PFIDCTAEFYAAEGTRYMQQTDVPDYLRHVEARLHEENERCLLYLDANTRKHLISTSEKQ
LLERHSPTILDKGFGMLMDANRVADLHRMYLLLARVGALESLKQALSAYIKATGHSIIVD
EEKDKDMVSTLLDFKARLDMIWEESFSKNEPFANTIKEAFEHLINLRQNRPAELIAKFID
GKLRAGNKGTSEEELESMLDKVLVLFRYIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKS
MISKLKTECGSQFTNKLEGMFKDIELSREINESFKQSSQARTKLPAGIEMNVHVLTTGYW
PTYPPMDIRLPHELNVYQDIFKQFYLSKHSGRRLMWQNSLGHCVLKAEFPKGKRELSVSL
FQTVVLMLFNDSLRLSFQDIKDSTGIEDKELRRTLQSLACGKVRILQKQPKGREVEDDDV
FTFNEDFTAPLFRIKVNAIQLKETVEENASTTERVFQDRQYQIDAAIVRIMKTRKVLSHT
LLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQVYNYLA
NT seq 2301 nt   +upstreamnt  +downstreamnt
atggttgtggatgtcaaggcgacgggccacgggctgagcgtggccagccccgtcaccgca
gtcggcctcgccggcggaagcaacagcaccgggacaacggccaatctcagccgcaagaag
gcaacgccgccccagccgaccaagaagctggtcatcaagcccttcaaagacaagcccaag
ctgccggccaactttgaagacgctacctgggacaagattagagccgccgtgagcgccatc
cacgtaaagcagcccgtctcttgtagtctcgagcagctctatcagaacgtggaagatctg
tgcttgcacaagctttcgggaaacctgtaccagcgtctgcaacaagaatgtgaaacgcac
atttccgccaagctgaatgctttggtcggccagagccctgatcccgtcgtctttctctcc
catgtggaaagatgctggcaggatcactgcgaccaaatgctcatgataaggagcattgcg
ctctaccttgaccgcacctacgtcatacaaaactccagcgtgcgctcactctgggacatg
ggcttgcagctctttcggaagcatctcacgtcttgtccggaggttgagcacaagacagtt
actgggatactgaggctcattgagaaggaaaggacgggggaaactgttgatcgcacactt
cttaagcatctcttgagaatgtttagtgcgcttggaacatacagtgaaagctttgagaaa
ccatttatcgactgcacggctgagttttacgcggctgaaggaacacgatacatgcaacag
actgatgtgcctgactaccttaggcacgtagaggccaggttgcacgaagagaacgagaga
tgcttgctttatctggacgccaacactcgtaagcacttgatatctacctcagagaagcag
ttgcttgagcgccattctcccaccattttggataagggttttggaatgcttatggacgca
aatcgtgtcgcggaccttcaccgtatgtaccttttacttgccagagtcggtgcactggag
tctctaaagcaagcccttagtgcgtacatcaaggcaactggtcatagcattatcgtggac
gaggagaaggacaaggacatggtttctacgctgctggatttcaaggcccggcttgatatg
atctgggaggaaagcttttcgaagaacgaaccgtttgcaaacacaatcaaagaggcgttt
gagcatcttataaatttgagacagaaccgacctgcggagctcattgctaaatttatagat
gggaagctaagagctgggaacaaaggaacgtctgaagaagaactcgagagtatgcttgac
aaagttttggtccttttcagatacattcaaggtaaggatgtctttgaagcattttacaaa
aaggatctggcaaaacgcttgctattgggcaaaagcgcatctatcgatgctgaaaagtcc
atgatttcgaagctaaaaactgagtgtggtagtcaatttacaaataaactcgaaggaatg
ttcaaggacattgaactttcaagggaaataaacgagtcctttaagcaatcctcacaagcc
aggacaaagctaccagctggaattgagatgaatgtgcatgtgttgaccactgggtattgg
cctacgtacccgcctatggatattcgtcttcctcatgaactcaatgtctatcaggacata
ttcaagcaattttacttgagcaagcacagtggcaggcggctgatgtggcagaattctttg
ggtcattgtgttttgaaagccgagtttcccaagggtaagagggaactatctgtttcacta
tttcagacggtggtacttatgcttttcaacgattcattaaggcttagctttcaagacata
aaggactcaacgggtattgaagacaaagagctccgcaggactctgcagtccttggcttgc
ggcaaggttcgaattttgcaaaagcaacccaaagggagagaggtggaggacgacgacgtg
tttacgttcaatgaggacttcacggctcctttgttccggatcaaggtgaatgcaatacag
ctgaaagagacggttgaagagaatgcaagtaccacagagagagtattccaggatcggcag
tatcagattgatgcggccattgtaagaattatgaagactaggaaggtcctgagccacacg
ttactgataacggagctgttccaacagctcaagttccctataaagccagcggacttgaag
aaacgtatcgagagcctgatcgaccgcgagtacttggagcgagacaagaacaaccctcag
gtatacaattatctcgcatga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (64)   
   KEGG ORTHOLOGY (1)   
   RefGene (58)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
   PGDBJ (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (77)   

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