KEGG   Selaginella moellendorffii: SELMODRAFT_441099
Entry
SELMODRAFT_441099 CDS       T01496                                 
Name
(RefSeq) hypothetical protein
  KO
K12823  ATP-dependent RNA helicase DDX5/DBP2 [EC:5.6.2.7]
Organism
smo  Selaginella moellendorffii
Pathway
smo03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:smo00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    SELMODRAFT_441099
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:smo03041]
    SELMODRAFT_441099
   03009 Ribosome biogenesis [BR:smo03009]
    SELMODRAFT_441099
Enzymes [BR:smo01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     SELMODRAFT_441099
Spliceosome [BR:smo03041]
 Complex A
  U1 snRNP components
   U1 related factors
    SELMODRAFT_441099
 Complex B
    SELMODRAFT_441099
Ribosome biogenesis [BR:smo03009]
 Eukaryotic type
  Pre-60S particles
   Helicases
    SELMODRAFT_441099
SSDB
Motif
Pfam: DEAD Helicase_C PPR_2 PPR_1 PPR WW ResIII ERCC3_RAD25_C CoV_nucleocap Ctf4_C TPR_19
Other DBs
NCBI-GeneID: 9646606
NCBI-ProteinID: XP_002970463
JGI: 441099
UniProt: D8RGG6
Position
Unknown
AA seq 1198 aa
MVAPVASTPGVHYAPEDPTLPPPWKALVDEETGYLYYWNTQSNETTYVKPVSSSGAPGFS
VNGSTFQESSMANGHVNGSNGSLYGSKVAEQPKLAALSMFGGQSQVVNGGSNAALVPGAL
GGYKRNADNFDYNGRDAYKRPRTQTTASPFDVDSYRRQHEITIVGTNVPAPFITFESAGL
PDEVLRERAKTYYVPYPSQMRYLLQNGAYVFFCLGVVQVLEAFGNTGSGKTLGYLLPAFM
HLERRRNNPRSGPTVLVLAPTRELATQIHEEAVKFGRSSRITSTCVYGGASKGPQLRDIE
RGCDIVIATPGRLNDFLEMRRISLRQVSYLVLDEADRMLDMGFEPQIRKIVNEVPVQRQT
LMYTATWPKEVRKIAGDLLMNPIQVNIGNTDDLAANKAITQCVEVVSPQDKARKLELILR
TQEPGSKIIIFCSTKRMCDQLARSLRRDFGAVAIHGDKSQGERDWVLSQFKAGKSPVLVA
TDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGLAHTFFAEQDGKYARDLI
KVLEGANQKVPPELREMALRGGFGKPRHNRWESGGGRGGGGAPANSFYGNRRASSWGGGA
AAATAPLARFPVANNGAIGFENGDVYRRGYGERISSGKRSYSRSRSRSPNARRSRGRSRS
PPGGAHGRFPEGYGVANDGGSGWRGLCAFSSGVIRRISSYGASARYAAAAQNAAAVEEAA
AGVSEEEGSAAAAAAAASIEEAKPKKKRAPRKKAEKVEEESPKSEEAKSTSKNEEKKKIE
GEKKKKASEPVKSDDAAAPAKKSGDSPPMLKTLKTLKSIISKSSGDVEVLKKKLAEYEGP
FSVAALERAMAGSSAEFALPLFRWATTRPEFCAESKAVHRFVTVLRNGEKLEEARAFIAN
ELSDLPEVQRMAYSATYIGYINSKNNEKADEVLAEMTERGFTPHGSALNRLLLMRWDRDG
VDGMLELQREHTARGWLLDAGGYNQLINGLCRADKMDEAVAELMESLDKGVVHHEGTFQV
LIHALHSRDRLDDALKVADKMFSVLDVKTRCAPLKTFVHKLVENKRYDDAMRIFEQLIRA
TEPTDLKIVSLLCEAGELDRAVEVAELMRKHQVKYNLEFKVLVAKLCEAQRVEDARKVFD
IMVEAGVSPDAETCTNLAMCSGKEVSKAVEKEEVEKEEEKAIDESFDENESESESNKA
NT seq 3597 nt   +upstreamnt  +downstreamnt
atggtggctccggtggcatcgacgcctggtgttcactatgccccagaagacccaactctc
cctcctccatggaaggccctggtggacgaagagactggatatctctactactggaacacg
cagtccaacgagacgacgtatgtgaagccagtctcttccagcggtgctccaggattttcc
gtgaatggttcgacttttcaagagagctcgatggcgaatggtcacgtcaatggaagcaat
ggttctctgtacgggagtaaggttgccgagcagccaaaactagcagcgctttcgatgttt
ggaggacagtcacaggttgtaaatggaggctcaaacgctgccttggtgccgggtgcgctg
ggtggctacaagcggaatgctgacaattttgactacaatggtcgggatgcctacaagcgc
cctcggactcaaacgacggcatcaccgtttgacgtcgattcttacaggagacagcacgag
ataaccatcgtgggaaccaacgttccagcaccgttcataactttcgaatcggcaggtctt
ccagatgaagtcttaagagagagggctaaaacttactacgtcccttatccttcgcagatg
cgatatttgctccagaatggagcatatgtctttttctgcttgggagtagtgcaagtttta
gaagcttttggaaacacggggtctggaaaaacgctggggtacttgctgccagcatttatg
cacttagagcgacgaaggaacaacccacgatcgggcccaacagtactcgttctcgcccca
acgcgagaattagctactcaaatacacgaggaggctgtcaagttcgggaggtcctccagg
attacgagcacgtgcgtttatggtggtgcttccaaaggcccccagctacgcgatatcgaa
cggggatgcgacattgttatcgctactccaggaaggctgaacgactttttggaaatgagg
aggatcagtttgaggcaggtctcctacctggtcctggatgaagcggatcgcatgctcgac
atgggattcgagccccagattcgcaaaatcgtgaatgaggtgcctgttcagagacaaacg
cttatgtacacagcgacgtggccgaaagaagtgagaaagattgctggcgacttgcttatg
aatcccatccaggtgaacattggaaatacagacgatctagctgcaaacaaggctatcact
cagtgcgtagaagttgtctcgcctcaagacaaagcgcgaaagctggagctgattcttcgg
actcaagagcctgggtccaagattatcatattctgctcaacaaagcgaatgtgtgatcaa
ctagctcgctcactgcgcagagattttggtgctgtggccattcatggtgacaaatcacag
ggcgaacgagactgggtcctttcgcagttcaaagctggaaaatcgcctgttcttgtcgct
accgatgtcgcagcaagagggctagatatcaaagatatcagagttgtcattaactacgac
tttcccaccggtgtggaggactacgtccaccgcattggtcggaccggccgagctggtgcc
actggcctggctcacactttttttgccgagcaagacgggaagtacgctagggacttgatc
aaagtcctcgagggtgcgaaccagaaagtcccaccggagttgagagagatggcacttcga
ggcggttttggaaagcctcgccacaaccgctgggagtccggcggtggccgaggaggcgga
ggagccccggccaacagcttctatggtaacaggcgagcaagctcttggggtggtggcgcg
gctgctgctactgcgccacttgcaaggtttcctgttgccaacaacggcgctatcggcttc
gagaacggggacgtttacaggaggggctatggagagaggatctcttccgggaagcggagc
tacagcaggagccggagccggagtcccaatgctcgtcggagccgcggacgaagccggtct
cctcctggtggagctcacgggcgattcccggaaggctatggagtcgccaacgatggtggc
tccggctggcgcggattgtgcgcattcagcagcggtgtgatccggagaatctcgagctac
ggcgcgagcgctaggtacgcagcggcagcccagaatgctgcagcggtggaggaagcggcg
gcgggcgtgagcgaggaagagggatctgccgccgctgctgctgctgctgcttcgatcgag
gaggccaagcccaagaagaagagggcgccgcggaagaaggccgagaaggtcgaggaggag
tcgcccaaaagcgaggaggcgaagagcacaagcaagaatgaagagaagaagaagatcgag
ggggagaaaaagaagaaggctagtgagcccgtgaagagcgatgacgctgctgccccagca
aagaagagtggtgattccccgccgatgctcaagacgctcaagacgctcaagagcatcata
tccaaatccagtggcgacgtggaggtgctcaagaagaagctggccgagtacgaggggccc
ttctcggtggcggcgctggagcgcgccatggctggatcctccgccgagtttgctctgccg
ctcttccgctgggccacaacccgcccggagttttgcgccgagagcaaggccgtccatcgg
ttcgtcacggttcttcgcaacggcgagaagctggaggaagctcgagcgttcattgccaac
gagctcagtgacctccctgaggtccagaggatggcctactcggcgacttacatcggctac
atcaactccaagaacaacgagaaagctgacgaggtcctggccgagatgaccgagcgtgga
ttcactccacacggctcggctctcaaccggctgctcctcatgcgctgggaccgagatgga
gtggacgggatgctggagctccagcgcgagcacaccgctcgagggtggctgctcgacgcc
ggaggatacaaccagctgattaacgggctgtgccgggcggacaagatggacgaggcggtg
gcggagctcatggagagcttggacaagggagttgtgcatcacgaagggacgttccaggtg
ctcattcacgctctccactccagggaccgcctggacgacgctctcaaagtcgcggacaag
atgttctcggtgctggacgtgaagactcgctgtgccccgctcaagactttcgtccacaag
ctagtggagaacaagcggtacgacgacgcgatgagaatcttcgagcagctgatccgggcg
acggagccgaccgacttgaagatcgtgagcttgctgtgcgaggccggggagctggaccga
gcggtggaggtggcggagctcatgaggaagcaccaagtcaagtataacttggagtttaag
gtgctggtggcgaagctttgcgaggcacagagggtggaggatgcaaggaaggtgtttgat
atcatggtggaggccggagtgagccccgacgcggagacttgtaccaatctggcgatgtgc
tccggaaaggaggtgagcaaggcagtggagaaagaagaagtggagaaggaagaagagaag
gcgatcgacgagagcttcgacgagaacgagagcgagagcgagagcaacaaggcgtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (61)   
   KEGG ORTHOLOGY (1)   
   RefGene (55)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
   PGDBJ (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (11)   
   Pfam (11)   
All databases (83)   

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